oriTDB
The information of the oriT region
oriTDB accession number 100870
Name oriT_pMR0716_ColRNAI  insolico
Sequence Completeness intact
oriT length 84 nt
oriT sequence GGGGTGTCGGGGCGAAGCCCTGACCCAGTCACGTAGCGATAGCGGAGTGTATACTGGCTT AACCATTCGGCATCAGTGCGGATT
IR (inverted repeat)[3-12] [16-25] nt  (GTGTCGGGGC..GCCCTGACCC)
Location of nic site [56-57] nt
Conserved sequence flanking the
  nic site 		CTGG|CTTA
Note predicted by the oriTfinder
L:3-12;R:16-25;D:56-57
Visualization of oriT structure
Reference
 N/A
I. Information of Relaxase
ID 941
Name MobC_pMR0716_ColRNAI insolico
GenBank accession number WP_000955999
Family Other
Length 107 aa
UniProt ID _
PDB ID _
Pfam MobC [PF05713.10], Evalue: 1.20E-12, Aligned region: 50..94
Note putative relaxase
Protein sequence [Download] MLTIRVTDDEHARLLERCEGKQLAVWMRRVCLGEPVARSGKLPTLAPPLLRQLAAIGNNL
NQTARKVNSGQWSSGDRVQVVAALMAIGDELRRLRLAVREQGARDDS
Reference
 N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
 N/A
 N/A
Information of plasmid
ID 1329
Plasmid name pMR0716_ColRNAI
GenBank accession number NZ_CP018108.1
Incompatibility group ColRNAI
Genome size 5310 bp
Coordinate of oriT  [Strand] 1647..1730 [+]
Drug resistance _
Heavy-metal resistance _
Virulence factor _
Xenobiotic degradation _
Host bacterium [NCBI Taxonomy ID] Escherichia coli MRSN352231 [562]
Reference
 N/A

Microbial Bioinformatics Group in MML, SJTU