oriTDB
The information of the oriT region
oriTDB accession number 100866
Name oriT_pKPC-98f  insolico
Sequence Completeness intact
oriT length 175 nt
oriT sequence GGTTTCGGGGCGCAGCCCTGAACCAGTCACGTAGCGCTAGCGGAGTGTATACTGGCTTAC TATGTTGGCACGGATGAGGGTGTCAGTGAAGTGCTTCATGTGGCAGGAGAAAAAAGGCGG CACCGGTGCGTCAGCAGAATATGTGATACAGGATATATTCCGCTTCCTCGCTCAC
IR (inverted repeat)[2-11] [15-24] nt  (GTGTCGGGGC..GCCCTGAACC)
Location of nic site [55-56] nt
Conserved sequence flanking the
  nic site 		CTGG|CTTA
Note predicted by the oriTfinder
L:2-11;R:15-24;D:55-56
Visualization of oriT structure
Reference
 N/A
I. Information of Relaxase
ID 938
Name Putative relaxase of pKPC-98f insolico
GenBank accession number WP_047719615
Family MOBP
Length 498 aa
UniProt ID _
PDB ID _
Pfam Relaxase [PF03432.13], Evalue: 1.20E-15, Aligned region: 49..246
Note putative relaxase
Protein sequence [Download] MIVKFHPRGRGGGAGPVDYLLGKDRQREGATVLQGKPEEVRELIDASPYVKKYTSGVLSF
AEADLPPGQREKLMASFERVLMPGLDKDQYSILWVEHADKGRLELNFLIPNTELLTGRRL
QPYYDRADRPRIDAWQTIVNGRLGLHDPNAPENRRALVTPSGLPKTKQEAAEAITRGLLT
LASSGELKSRQDVTDTLEGAGFEVVRTTKSSISIADPDGGRNIRLKGAIYEQSFNAGEGL
RAAIESAAAEYRRDAESRIQRARAVCQSGTERKREENQRRHPRPRAEYERGDGEKPAERT
ADCRADMAHHPDGVSAADRHEREHSVVAGAADNRQLHASSSAGRYPGENDRPDVGSALSG
EQRRPEVSYPAAGDTNRSHPLRRDDMDPPETGVAENDRAGKAVAERIRAATAGLLAKAGR
MGERLRGMAEHVWAYATGERGAERARVGLEHAGAEFKRAAAPLVRELNAIELRQRENEYQ
KTLELERQPQKTYRGPTL
Reference
 N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
 N/A
 N/A
Information of plasmid
ID 1326
Plasmid name pKPC-98f
GenBank accession number NZ_CP017993.1
Genome size 21186 bp
Coordinate of oriT  [Strand] 2042..2216 [+]
Drug resistance _
Heavy-metal resistance _
Virulence factor _
Xenobiotic degradation _
Host bacterium [NCBI Taxonomy ID] Enterobacter cloacae complex sp. ECNIH7 [1915310]
Reference
 N/A

Microbial Bioinformatics Group in MML, SJTU