oriTDB

The information of the oriT region

oriTDB accession number	100855
Name	oriT_pCFSAN017963_02
Sequence Completeness	intact
oriT length	83 nt
oriT sequence	GGGTGTCGGGGCGCAGCCATGACCCAGTCACGTAGCGATAGCGGAGTGTATACTGGCTTA ACTCTGAGGCATCAGTGCAGATT
IR (inverted repeat)	[3-12] [16-25] nt (GTGTCGGGGC..GCCATGACCC)
Location of nic site	[56-57] nt
Conserved sequence flanking the nic site	CTGG\|CTTA
Note	predicted by the oriTfinder
	L:3-12;R:16-25;D:56-57

Visualization of oriT structure

1...5....10....15....20....25....30....35....40....45....50....55....60

1

GGGTGTCGGGGCGCAGCCATGACCCAGTCACGTAGCGATAGCGGAGTGTATACTGGCTTA

61

ACTCTGAGGCATCAGTGCAGATT

Reference
N/A

I. Information of Relaxase

ID	927
Name	MobC_pCFSAN017963_02
GenBank accession number	WP_088137336
Family	Other
Length	81 aa
UniProt ID	_
PDB ID	_
Pfam	MobC [PF05713.10], Evalue: 3.10E-13, Aligned region: 24..68
Note	putative relaxase
Protein sequence [Download]	MRRVCLGEPVARSGKLPTLAPPLLRQLAAIGNNLNQTARKVNSGQWSSCDRVQVVAALMA IERELRSLRQVVREQGERDDS

Reference
N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
N/A

N/A

Information of plasmid

ID	1315
Plasmid name	pCFSAN017963_02
GenBank accession number	NZ_CP017722.1
Incompatibility group	ColRNAI
Genome size	7665 bp
Coordinate of oriT [Strand]	7085..7167 [-]
Drug resistance	_
Heavy-metal resistance	_
Virulence factor	_
Xenobiotic degradation	_
Host bacterium [NCBI Taxonomy ID]	Salmonella enterica subsp. enterica CFSAN017963 [70803]

Reference
N/A