oriTDB
The information of the oriT region
oriTDB accession number 100855
Name oriT_pCFSAN017963_02  insolico
Sequence Completeness intact
oriT length 83 nt
oriT sequence GGGTGTCGGGGCGCAGCCATGACCCAGTCACGTAGCGATAGCGGAGTGTATACTGGCTTA ACTCTGAGGCATCAGTGCAGATT
IR (inverted repeat)[3-12] [16-25] nt  (GTGTCGGGGC..GCCATGACCC)
Location of nic site [56-57] nt
Conserved sequence flanking the
  nic site 		CTGG|CTTA
Note predicted by the oriTfinder
L:3-12;R:16-25;D:56-57
Visualization of oriT structure
Reference
 N/A
I. Information of Relaxase
ID 927
Name MobC_pCFSAN017963_02 insolico
GenBank accession number WP_088137336
Family Other
Length 81 aa
UniProt ID _
PDB ID _
Pfam MobC [PF05713.10], Evalue: 3.10E-13, Aligned region: 24..68
Note putative relaxase
Protein sequence [Download] MRRVCLGEPVARSGKLPTLAPPLLRQLAAIGNNLNQTARKVNSGQWSSCDRVQVVAALMA
IERELRSLRQVVREQGERDDS
Reference
 N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
 N/A
 N/A
Information of plasmid
ID 1315
Plasmid name pCFSAN017963_02
GenBank accession number NZ_CP017722.1
Incompatibility group ColRNAI
Genome size 7665 bp
Coordinate of oriT  [Strand] 7085..7167 [-]
Drug resistance _
Heavy-metal resistance _
Virulence factor _
Xenobiotic degradation _
Host bacterium [NCBI Taxonomy ID] Salmonella enterica subsp. enterica CFSAN017963 [70803]
Reference
 N/A

Microbial Bioinformatics Group in MML, SJTU