oriTDB
The information of the oriT region
oriTDB accession number 100849
Name oriT_pRgalIE4872c  insolico
Sequence Completeness core
oriT length 42 nt
oriT sequence ATCCAAGGGCGCAATTATACGTCGCTGATGCGACGCCCTTGC
IR (inverted repeat)[20-25] [30-35] nt  (CGTCGC..GCGACG)
Location of nic site [9-10] nt
Conserved sequence flanking the
  nic site 		_
Note predicted by the oriTfinder
L:20-25;R:30-35;D:9-10
Visualization of oriT structure
Reference
 N/A
I. Information of Relaxase
ID 921
Name TraA_pRgalIE4872c insolico
GenBank accession number WP_074070971
Family MOBQ
Length 1103 aa
UniProt ID A0A1L5NRI8
PDB ID _
Pfam MobA_MobL [PF03389.14], Evalue: 1.40E-73, Aligned region: 17..243
AAA_30 [PF13604.5], Evalue: 1.30E-57, Aligned region: 381..569
Viral_helicase1 [PF01443.17], Evalue: 3.60E-05, Aligned region: 668..737
AAA_19 [PF13245.5], Evalue: 1.60E-10, Aligned region: 386..513
UvrD_C_2 [PF13538.5], Evalue: 1.70E-07, Aligned region: 692..736
Note putative relaxase
Protein sequence [Download] MAVPHFSVSIVARGSGRSAVLSAAYRHCAKMDYEREARTIDYTRKQGLAHEEFVIPADAP
DWLRTIIADRSVSGASEAFWNKVEAFEKRSDAQLAKDVTIALPVELTYEQNIALVREFVE
RHIIATGMVADWVYHDAPGNPHVHLMTTLRPLTDDGFGGKKVAVLGPDGNPMRNDSGKIV
YELWAGSTDDFNALRDGWFVCQNRHLALAGLDICIDGRSFEKQGIELTPTIHLGVGTTAI
ERKSEAATKPLTLERIELQEDRRAENARRVQRRPEIVLDLITREKSVFDERDVAKILHRY
IDDADLFQSLLVRTLQSPETLQLEHERIEFATGVRVSGKYTTREVIQLEAEMANRAIWLS
HRSSHGVREAVLEATFSRHSRLSEEQKIAIAHVAGGERIAAVIGRAGAGKTTMMKAAREA
WQAAGYRVVGGALAGKAAEGLEKEAGIQSRTLSSWVLRWNAGRNQLDDKTVFVLDEAGMV
SSRQMALFVEAATKAGAKLVLVGDPEQLQPIEAGAAFRAIADRIGYAELETIYRQRKQWM
RDASLDLARGKVGKAVDAYRAYGHFKGSELKVQAVENLIADWNGDCDPVKTTLILAHLRR
DVRMLNEMARAKLVERGILAEGFVFKTEDGNRKFAAGDQIVFLKNEGSLSVKNGMLAKVV
EALPGRIVAEIGEGEHRRQVTVEQRFYNHVDHGYATTIHKSQGATIDRVYILASLSLDRH
LTYVAMTRHREDLAVYYGRRSFAKSGGLIPILSRRNAKETTLDYEKGAFYKQALRFAEAR
GLHLVNVARTLVRDRLEWTVRQKQKLADLATRLAAIGGKLGLSTGAKKSPIQNIIKEAKP
MVSGIATFAKSLEQAVEDKVAADPGLKKQWEEVSSRFHLVYAQPETAFKAVNVDAILKDE
AAAKSTIARIGTQPDSFGALKGKTGILASRADKQGRERALNNAPALARKLERYLRQRADA
ERKHEVEERAVRLKVSVDIPALSPAAKRTLERVRDAIDRNDLPAGLEYALADKMVKAELE
GFARAVSERFGERTFLPLAAKDTSGQAFQTVTTGMSAGQKAEVQSAWNSMRTVQQFAAHE
RTTETLKQVETLRQTKAQGLSLK
Reference
 N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
 N/A
 N/A
Information of plasmid
ID 1309
Plasmid name pRgalIE4872c
GenBank accession number NZ_CP017104.1
Genome size 506339 bp
Coordinate of oriT  [Strand] 483359..483400 [+]
Drug resistance _
Heavy-metal resistance _
Virulence factor _
Xenobiotic degradation _
Host bacterium [NCBI Taxonomy ID] Rhizobium gallicum IE4872 [56730]
Reference
 N/A

Microbial Bioinformatics Group in MML, SJTU