oriTDB

The information of the oriT region

oriTDB accession number	100849
Name	oriT_pRgalIE4872c
Sequence Completeness	core
oriT length	42 nt
oriT sequence	ATCCAAGGGCGCAATTATACGTCGCTGATGCGACGCCCTTGC
IR (inverted repeat)	[20-25] [30-35] nt (CGTCGC..GCGACG)
Location of nic site	[9-10] nt
Conserved sequence flanking the nic site	_
Note	predicted by the oriTfinder
	L:20-25;R:30-35;D:9-10

Visualization of oriT structure

1...5....10....15....20....25....30....35....40....45....50....55....60

1

ATCCAAGGGCGCAATTATACGTCGCTGATGCGACGCCCTTGC

Reference
N/A

I. Information of Relaxase

ID	921
Name	TraA_pRgalIE4872c
GenBank accession number	WP_074070971
Family	MOB_Q
Length	1103 aa
UniProt ID	A0A1L5NRI8
PDB ID	_
Pfam	MobA_MobL [PF03389.14], Evalue: 1.40E-73, Aligned region: 17..243 AAA_30 [PF13604.5], Evalue: 1.30E-57, Aligned region: 381..569 Viral_helicase1 [PF01443.17], Evalue: 3.60E-05, Aligned region: 668..737 AAA_19 [PF13245.5], Evalue: 1.60E-10, Aligned region: 386..513 UvrD_C_2 [PF13538.5], Evalue: 1.70E-07, Aligned region: 692..736
Note	putative relaxase
Protein sequence [Download]	MAVPHFSVSIVARGSGRSAVLSAAYRHCAKMDYEREARTIDYTRKQGLAHEEFVIPADAP DWLRTIIADRSVSGASEAFWNKVEAFEKRSDAQLAKDVTIALPVELTYEQNIALVREFVE RHIIATGMVADWVYHDAPGNPHVHLMTTLRPLTDDGFGGKKVAVLGPDGNPMRNDSGKIV YELWAGSTDDFNALRDGWFVCQNRHLALAGLDICIDGRSFEKQGIELTPTIHLGVGTTAI ERKSEAATKPLTLERIELQEDRRAENARRVQRRPEIVLDLITREKSVFDERDVAKILHRY IDDADLFQSLLVRTLQSPETLQLEHERIEFATGVRVSGKYTTREVIQLEAEMANRAIWLS HRSSHGVREAVLEATFSRHSRLSEEQKIAIAHVAGGERIAAVIGRAGAGKTTMMKAAREA WQAAGYRVVGGALAGKAAEGLEKEAGIQSRTLSSWVLRWNAGRNQLDDKTVFVLDEAGMV SSRQMALFVEAATKAGAKLVLVGDPEQLQPIEAGAAFRAIADRIGYAELETIYRQRKQWM RDASLDLARGKVGKAVDAYRAYGHFKGSELKVQAVENLIADWNGDCDPVKTTLILAHLRR DVRMLNEMARAKLVERGILAEGFVFKTEDGNRKFAAGDQIVFLKNEGSLSVKNGMLAKVV EALPGRIVAEIGEGEHRRQVTVEQRFYNHVDHGYATTIHKSQGATIDRVYILASLSLDRH LTYVAMTRHREDLAVYYGRRSFAKSGGLIPILSRRNAKETTLDYEKGAFYKQALRFAEAR GLHLVNVARTLVRDRLEWTVRQKQKLADLATRLAAIGGKLGLSTGAKKSPIQNIIKEAKP MVSGIATFAKSLEQAVEDKVAADPGLKKQWEEVSSRFHLVYAQPETAFKAVNVDAILKDE AAAKSTIARIGTQPDSFGALKGKTGILASRADKQGRERALNNAPALARKLERYLRQRADA ERKHEVEERAVRLKVSVDIPALSPAAKRTLERVRDAIDRNDLPAGLEYALADKMVKAELE GFARAVSERFGERTFLPLAAKDTSGQAFQTVTTGMSAGQKAEVQSAWNSMRTVQQFAAHE RTTETLKQVETLRQTKAQGLSLK

Reference
N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
N/A

N/A

Information of plasmid

ID	1309
Plasmid name	pRgalIE4872c
GenBank accession number	NZ_CP017104.1
Genome size	506339 bp
Coordinate of oriT [Strand]	483359..483400 [+]
Drug resistance	_
Heavy-metal resistance	_
Virulence factor	_
Xenobiotic degradation	_
Host bacterium [NCBI Taxonomy ID]	Rhizobium gallicum IE4872 [56730]

Reference
N/A