oriTDB
The information of the oriT region
oriTDB accession number 100848
Name oriT_pRgalIE4872a  insolico
Sequence Completeness core
oriT length 45 nt
oriT sequence GGATCCGAAGGGCGCAATTATACGTCGCTGACGCGACGCCCTTGC
IR (inverted repeat)[23-28] [33-38] nt  (CGTCGC..GCGACG)
Location of nic site [12-13] nt
Conserved sequence flanking the
  nic site 		_
Note predicted by the oriTfinder
L:23-28;R:33-38;D:12-13
Visualization of oriT structure
Reference
 N/A
I. Information of Relaxase
ID 920
Name TraA_pRgalIE4872a insolico
GenBank accession number WP_074070644
Family MOBQ
Length 1103 aa
UniProt ID A0A1L5NQB3
PDB ID _
Pfam MobA_MobL [PF03389.14], Evalue: 3.30E-75, Aligned region: 17..243
AAA_30 [PF13604.5], Evalue: 2.70E-58, Aligned region: 381..570
AAA_19 [PF13245.5], Evalue: 1.40E-11, Aligned region: 386..513
Viral_helicase1 [PF01443.17], Evalue: 0.00014, Aligned region: 659..737
Note putative relaxase
Protein sequence [Download] MAVPHFSVSVVARGSGRSAVLSAAYRHCAKMEFEREARTIDYTRKQGLLHEEFVIPADAP
EWLRSMIADRSVSGASEAFWNRVEDFEKRSDAQLAKDVTIALPIELTAEQNIALVRDFVE
QQITATGMVADWVYHDAPGNPHVHLMTTLRPLTADGFGAKKVAATGPDGNPIRNDAGKIV
YELWAGSIDDFNVFRDGWFACQNRHLALAGLDIRVDGRSFEKQGIDLEPTIHLGVGTKAI
ERKADGAAQPIELERLELQDAKRSENVRRIDRNPELVLDLIMREKSVFDERDVAKILHRY
VDDAVLFQSLMVRILLCPETFRIERERLDLASGIREPAKYTTRDMIRLEAEMANRAVWLS
QRSTHGVREAVLAATFARHERLSDEQKTAIEHVAGPERIAAVIGRAGAGKTTMMKAAREA
WEAAGYRVVGAALAGKAAEGLEKEAGIISRTFASWELRWNQGRDQLDGKTVFVLDEAGMV
SSRQMALFVEAVTKAGAKLVLVGDPEQLQPIEAGAAFRAIADRIGYAELETIYRQRQQWM
RDASLDLARGKVGSAVDAYRANGRVIGSDLKADAVDNLIAAWDRDYDPAKTSLILAHLRR
DVRMLNQMARIKLIERGVLDQGTMFRTADGERNFAVGDQIVFLKNEGSLGVKNGMLARVV
ETGPGRITARIGEGEDARHVLVEQRFYNNLDHGYATTIHKSQGATVDQVKVLASLSLDRH
LTYVAMTRHREDLAVYYGRRSFAKNGGLIPILSRSNAKETTLDYENSAFYRQALRFAEAR
GLHLVNVARTLVRDRLEWVVSQKQKLANLGARLAAVAGRLGLIRGAAQYLTQNNTKEPKP
MVSGITAFAKSVDQAIEDKVAVDPGLKKQWEEVSTRFHLVYAQPESAFKAVNVDAMLKDE
TVATSTLAKLGSEPESFGALKGKTGILASRADKQEREKAQTNAPALARNLERYLRQRAEA
ERKFEVEERAVRLKVSIDIPALSPNAKQTLERVRDAIDRNDLPAGLEYALADKMVKAELE
GFAKAVSDRFGERTFLSLAAQDPSGQTFNAVTSGMTAGQKAEVQSAWNSMRTVQQLAAHE
RTTEALKQAETLRQTKSQGLSLK
Reference
 N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
 N/A
 N/A
Information of plasmid
ID 1308
Plasmid name pRgalIE4872a
GenBank accession number NZ_CP017103.1
Genome size 176006 bp
Coordinate of oriT  [Strand] 166705..166749 [+]
Drug resistance _
Heavy-metal resistance _
Virulence factor _
Xenobiotic degradation _
Host bacterium [NCBI Taxonomy ID] Rhizobium gallicum IE4872 [56730]
Reference
 N/A

Microbial Bioinformatics Group in MML, SJTU