oriTDB
The information of the oriT region
oriTDB accession number 100847
Name oriT_pSA4  insolico
Sequence Completeness intact
oriT length 191 nt
oriT sequence GTGGGGTAGGTATCTCCCAACCGTGAAGCGCGATCCGATAGGATTGAGCGTATCGGTTAA CATTAGCCGCCGCAAGGCTTATCCTGCCATAAAGTAGATACCTACCCCACAAACAAAAAG CGGTGGCAACTGCCACCGCTTCAAAATTCCACGCCGCCTCAATGCTGAGTGAACGTGGAC GGTAAAAGCTA
IR (inverted repeat)IR1: [19-38] [39-58] nt  (AACCGTGAAGCGCGATCCGA..TAGGATTGAGCGTATCGGTT)
IR2: [119-128] [131-140] nt  (AGCGGTGGCA..TGCCACCGCT)
Location of nic site [86-87] nt
Conserved sequence flanking the
  nic site 		TATCCTG|C
Note predicted by the oriTfinder
L:19-38;R:39-58;L:119-128;R:131-140;D:86-87
Visualization of oriT structure
Reference
 N/A
I. Information of Relaxase
ID 919
Name TraA_pSA4 insolico
GenBank accession number WP_007686163
Family MOBQ
Length 1043 aa
UniProt ID A0A1D8AGX6
PDB ID _
Pfam MobA_MobL [PF03389.14], Evalue: 2.50E-70, Aligned region: 17..217
AAA_30 [PF13604.5], Evalue: 3.40E-58, Aligned region: 346..535
AAA_19 [PF13245.5], Evalue: 6.50E-08, Aligned region: 351..478
Note putative relaxase
Protein sequence [Download] MAIYHFSAKVISRANGSSAVASAAYRAAERLHDDRLGRDHDFSNKAGVVHSEIMLPEGTP
ERLNDRATLWNEVEAGEKRKDAQLAREVEFSIPRELDQKEGIRLARDFVEKQFVERGMVA
DMNVHWDLGKDGQSKPHAHVMLSMREVGLEGFGQKVREWNSTALLQEWREAWADHVNERL
AELDIDARIDHRSYEAQGIELEPQHKIGPAASRMPEQGLEAERVEDHARIARENGEKIIA
NPQIALDAITRQQATFTRRDLAQFAFRHSDGKDQFDQVMSAVRTSPELVALGKDGRGEDR
FTSREMIDTEQRLERAGYGLADRAGHGLPAASKMGGRDTAERVGLALGSQQKDALAHITG
KNDLAIVVGYAGTGKSTMLGVARDEWERAGYQVRGAALSGIAAEGLEGGSGIASRTIASM
EYQWEQGRELLGPRDVLVIDEAGMIGTRQMERVLSEAERAGAKVILVGDAEQLQAIEAGA
AFRSLAERYGAAEISDVRRQHEDWQKDATRALATGRTGEAIHAYAEHGMVHAAETREAAR
ESLVEGWDRARIADPDKTRIILTHTNAEVRDLNLAARDRLRDAGELGQDVRVSAERGARE
FATGDRIMFLKNDRGLGVKNGTLGKVERVSPDSMAVKLDDGRQVAFDLKDYAHVDHGYAA
TIHKSQGVTVDRAHVLATPGMDRHSAYVALSRHRDGVQLHYGRDDFADDRRLVRTLSRER
AKDMASDYPMYRDRDAEAQSFADRRGLSGEIRVADAPERKGVEILAPRAGTSRQMGEDSR
TPDIGGDRGAGEAKAAAERQSRRGMFDGLKLSAAPVKAAEPAQGAKEKPAPKRGMFDGLK
LPQRTPTPEPAKELPARAEQGQDRDFRRAVERASRSAEAVLQARASGGPVLEHQKVALER
AVQALDTLRPRASDDMAEAMKRDSGLLREAAAGRSGPMIEAIRQEARVRADPNLRADRFV
ERWQQLSQDRDRLYRAGDMAGRKTLGQEMAGMAKSLERDPQVESILRGRTRELGLEIGMS
PGRELGRELSRGLGISHDRGLSR
Reference
 N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
 N/A
 N/A
Information of plasmid
ID 1307
Plasmid name pSA4
GenBank accession number NZ_CP017079.1
Genome size 67284 bp
Coordinate of oriT  [Strand] 59882..60072 [-]
Drug resistance insolico resistance to hydrophobic antibiotics such as nalidixic acid
Heavy-metal resistance _
Virulence factor _
Xenobiotic degradation _
Host bacterium [NCBI Taxonomy ID] Novosphingobium resinovorum SA1 [158500]
Reference
 N/A

Microbial Bioinformatics Group in MML, SJTU