oriTDB
The information of the oriT region
oriTDB accession number 100829
Name oriT_pSA01AB09084001_4  insolico
Sequence Completeness intact
oriT length 174 nt
oriT sequence GGTTTCGGGGCGCAGCCCTGAACCAGTCACGTAGCGCTAGCGGAGTGTATACTGGCTTAC TATGTTGGCACGGGTGCGGGAATCAGTGAAGCGCTTCATGTGGCAGGAGAAAAATGCAGC AGCGGAGCGTAAGCAGAATATATGAGACAGGATATATTCCGCTTCCTCGCTCAC
IR (inverted repeat)[2-11] [15-24] nt  (GTTTCGGGGC..GCCCTGAACC)
Location of nic site [55-56] nt
Conserved sequence flanking the
  nic site 		CTGG|CTTA
Note predicted by the oriTfinder
L:2-11;R:15-24;D:55-56
Visualization of oriT structure
Reference
 N/A
I. Information of Relaxase
ID 901
Name Putative relaxase of pSA01AB09084001_4 insolico
GenBank accession number WP_059476363
Family MOBP
Length 498 aa
UniProt ID _
PDB ID _
Pfam Relaxase [PF03432.13], Evalue: 2.20E-17, Aligned region: 41..275
Note putative relaxase
Protein sequence [Download] MIVKFHPRGRGGGAGPVDYLLGKDRQRDGATVLQGKPEEVRELIDASPYAKKYTSGVLSF
AEKDLPPGQREKLMASFERVLMPGLDKDQYSVLWVEHQDKGRLELNFLIPNTELLTGRRL
QPYYDRADRPRIDAWQTIVNGRLGLHDPNAPENRRALVTPSALPETKQEAAQAITRGLLA
LASSGELKTRQDVTEALESAGFEVVRTTKSSISIADPDGGRNIRLKGAIYEQSFNAGKGL
RAEIESAAAEYRRDAESRIQRAREVCQSGTERKREENQRRHPRPRPEAVLSHEPAHERHG
AYGQPDVADHRPGVCTADSIGRKHSVVAGAADTRQLHDYPGAEAHAGHAVREEQRRAALD
LRRAETPLREGEPGSGTVRRGFELDDTGGEIAHDGAGKTVAERIRAATAGLLEKAGRVGE
RLRGMADDVWSYATGERGAERARHGLEQAGAEFERSAAPVVERLNSIEAHRQQERAAQHQ
KTLELERSQRQKGFELGM
Reference
 N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
 N/A
 N/A
Information of plasmid
ID 1289
Plasmid name pSA01AB09084001_4
GenBank accession number NZ_CP016532.1
Genome size 4245 bp
Coordinate of oriT  [Strand] 601..774 [-]
Drug resistance _
Heavy-metal resistance _
Virulence factor _
Xenobiotic degradation _
Host bacterium [NCBI Taxonomy ID] Salmonella enterica subsp. enterica SA01AB09084001 [611]
Reference
 N/A

Microbial Bioinformatics Group in MML, SJTU