oriTDB
The information of the oriT region
oriTDB accession number 100823
Name oriT_pBSY18_4  insolico
Sequence Completeness core
oriT length 34 nt
oriT sequence GGGAGGGCGCGCTTATACGTCGTGCCGACGTGCG
IR (inverted repeat)[17-22] [26-31] nt  (ACGTCG..CGACGT)
Location of nic site _
Conserved sequence flanking the
  nic site 		_
Note predicted by the oriTfinder
L:17-22;R:26-31
Visualization of oriT structure
Reference
 N/A
I. Information of Relaxase
ID 895
Name TraA_pBSY18_4 insolico
GenBank accession number WP_069052069
Family MOBQ
Length 978 aa
UniProt ID A0A1B3NB15
PDB ID _
Pfam MobA_MobL [PF03389.14], Evalue: 2.00E-68, Aligned region: 17..221
AAA_30 [PF13604.5], Evalue: 2.60E-53, Aligned region: 351..540
Viral_helicase1 [PF01443.17], Evalue: 0.00022, Aligned region: 615..705
AAA_19 [PF13245.5], Evalue: 5.70E-08, Aligned region: 356..483
Note putative relaxase
Protein sequence [Download] MAIYHFSAKAISRAAGSSALAAAAYRAGERLHDDRLGRTHDFTNKAGVVHSEIMLPEGAN
EAWSDREKLWNDVEASEVRKDAQLAREIEFALPREMTQQQAIELARDFVKAEFVDRGMIA
DLNVHWDIGADGEAKPHAHVMLTMREIVVAEDGSTTFGPKVRDWNRTELLTHWREAWATH
ANQRMAELDIDARIDHRSLAAQGIDLEPQSKIGAAASRMAGEGLSPERLAEHADIARSNG
EKIIADPNIALNAITHQQATFTTRDLAMFAHRHSADKEQFDAVMSAVKNAPDILALGKDG
KGNDRFTSRDMIETEQRLERATIRLEARRSHAVPDRYREVALANAKARGMDLSAEQRGAL
EHVTSAKGVSNVIGYAGTGKSAMLGVAREAWVRAGYTVQGAALSGIAAEGLEHGSRIPSR
TLASLEHQWGQGRELLTSKHILVIDEAGMLGTRQMERVVSHAQQQGAKVVMVGDPQQLQA
IEAGAAFRAAAERHGAVEIASIRRQQIDWQREATRELAIGRTGEALGRYEEAGHVHVAET
REAARSQLVDAWDRDRQANPDASRIILTHTNDEVRALNEAVREKVRASGDLGEDVALKVE
RGARQFADGDRVMFLKNERSLGVKNGSLGTVESVSSLRMSVKLDDGKAVAFDLKDYAHLD
HGYAATIHKAQGMTVDQVKLLATPGMDSHGAYVALSRHRSQVDLHYGKDDFGDRKALTRT
LSRERVKDMASDYARQAEKAAEQQPQRETRAGLKVSRSGHLADLLKGASVAQQREPAAET
RRKVALPEKVSDKQVFDNAVQRFARVAQDIVAMRDKGLQPLASQRTALDKAGAELNALRP
DSFGDLRKAVNRDLSLIPEAVKGRTDRAIQAMEQQSRLRIEAQRVAAANERRADGFVDQW
QRQSEQYRALRKSGSAAASDKVRASLVDMAKGLERDPQLESVLAARRPQLGLDAMSTKTL
SQDLQKSLGLSRGLGIGM
Reference
 N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
 N/A
 N/A
Information of plasmid
ID 1283
Plasmid name pBSY18_4
GenBank accession number NZ_CP016461.1
Genome size 39932 bp
Coordinate of oriT  [Strand] 27002..27035 [-]
Drug resistance _
Heavy-metal resistance _
Virulence factor _
Xenobiotic degradation _
Host bacterium [NCBI Taxonomy ID] Blastomonas sp. RAC04 [1842535]
Reference
 N/A

Microbial Bioinformatics Group in MML, SJTU