oriTDB
The information of the oriT region
oriTDB accession number 100822
Name oriT_pBSY18_3  insolico
Sequence Completeness core
oriT length 34 nt
oriT sequence GGGAGGGCGCGCTTATACGTCGTGCCGACGTGCG
IR (inverted repeat)[17-22] [26-31] nt  (ACGTCG..CGACGT)
Location of nic site _
Conserved sequence flanking the
  nic site 		_
Note predicted by the oriTfinder
L:17-22;R:26-31
Visualization of oriT structure
Reference
 N/A
I. Information of Relaxase
ID 894
Name TraA_pBSY18_3 insolico
GenBank accession number WP_069049348
Family MOBQ
Length 979 aa
UniProt ID _
PDB ID _
Pfam MobA_MobL [PF03389.14], Evalue: 8.40E-69, Aligned region: 17..221
AAA_30 [PF13604.5], Evalue: 3.20E-54, Aligned region: 351..540
AAA_19 [PF13245.5], Evalue: 6.30E-08, Aligned region: 356..483
Note putative relaxase
Protein sequence [Download] MAIYHFSAKAISRAAGSSAVAAAAYRAGERLHDDRLGRTHDFTNKAGVVHSEVMLPEGAN
EAWADRERLWNDVEAAEVRKDAQLAREIEFALPREMTQAQAIELARDFVKAEFVDRGMIA
DLNIHWDIGADGEAKPHAHVMLTMREIVVGEDGSATFGAKVRDWNRTELLTHWREAWATH
ANQRMAELDINARIDHRSLAAQGIDLEPQSKIGAAASRMAGEGLSPERLAEHANIARSNG
EKIIADPNIALTAITHQQATFTTRDLAMFAHRHSADKEQFDAVMSAVKNAPELIALGKDG
KGSDRFTSREMLETEQRLERTTIRLEARRSHAVPDRYREVALANAKLRGLDLSLEQRGAL
EHVTSAKGVSNVIGYAGTGKSAMLGVAREAWERAGYTVQGAALSGIAAEGLEHGSRIPSR
TLASLEHQWKQGRELLTSKHILVIDEAGMLGTRQMERVVSHAQQHGAKVVMVGDPQQLQA
IEAGAAFRAAAERHGAVEIASIRRQQIDWQREATCELATGRTGEALGRYEQAGHVHVAET
REAARAALVDAWERDRQAKPDVSRIILTHTNDEVRALNEAVREKVRASGDLGDDVSLKVE
RGARQFADGDRIMFLKNERSLGVKNGSLGTVESVSALRMSVKLDDGKAVAFDLKDYAHLD
HGYAATIHKAQGMTVDQVKLLATPGMDSHGAYVALSRHRTQVDLHYGKDDFADRKALTRT
LSRERGKDMASDYARQPEKTAEASRPQLEARAGLRVSRSGYLADLLKGATAAPQREPVAK
VRAKVALPEQATGRQAFDKAVQRFARVAQDIVAMRDKGLEPLVSQRSALNKAGAELNALR
PDSFGDLRRAVNCDLSLIGEAVKGRTDRAIQGMEQQARLRIEAQRVAAANEWRADNFVDQ
WQRQSQQYRALRKGGSAAASDKVRAELVGMAKGLERDPQLESVLANRRPQLGLDAMSTKT
LSQDLQKSLGLSRGSGMGM
Reference
 N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
 N/A
 N/A
Information of plasmid
ID 1282
Plasmid name pBSY18_3
GenBank accession number NZ_CP016459.1
Genome size 42134 bp
Coordinate of oriT  [Strand] 28191..28224 [+]
Drug resistance _
Heavy-metal resistance _
Virulence factor _
Xenobiotic degradation _
Host bacterium [NCBI Taxonomy ID] Blastomonas sp. RAC04 [1842535]
Reference
 N/A

Microbial Bioinformatics Group in MML, SJTU