oriTDB

The information of the oriT region

oriTDB accession number	100821
Name	oriT_pBSY16_2
Sequence Completeness	core
oriT length	44 nt
oriT sequence	GGATCCAAGGGCGCAATTATACGTCGCTGATGCGACGTGCTTGC
IR (inverted repeat)	[22-27] [32-37] nt (CGTCGC..GCGACG)
Location of nic site	[11-12] nt
Conserved sequence flanking the nic site	_
Note	predicted by the oriTfinder
	L:22-27;R:32-37;D:11-12

Visualization of oriT structure

1...5....10....15....20....25....30....35....40....45....50....55....60

1

GGATCCAAGGGCGCAATTATACGTCGCTGATGCGACGTGCTTGC

Reference
N/A

I. Information of Relaxase

ID	893
Name	TraA_pBSY16_2
GenBank accession number	WP_069061854
Family	MOB_Q
Length	1100 aa
UniProt ID	_
PDB ID	_
Pfam	MobA_MobL [PF03389.14], Evalue: 3.80E-77, Aligned region: 17..243 AAA_30 [PF13604.5], Evalue: 3.10E-56, Aligned region: 381..569 AAA_19 [PF13245.5], Evalue: 8.40E-10, Aligned region: 386..513 Viral_helicase1 [PF01443.17], Evalue: 8.70E-05, Aligned region: 660..737
Note	putative relaxase
Protein sequence [Download]	MAIAHFSASIVSRGGGRSVVLSAAYRHCAKMEYEREARTIDYTRKEGLLHEEFMLPADAP KWVRALIADRSVAGASEAFWNKVEAFEKRSDAQLARDLTIALPLELTPEQNIALVRDFVA KHIHAKGMVADWVYHDNPGNPHIHLMTTLRPLTEDGFGSKKVAVIGEHGQPVRTKSGKIL YELWAGSTDDFNSLRDGWFERLNHHLALGGIDLKIDGRSYEKQGIELEPTIHLGVGAKAI ERKAQEQGVRPELERIELNEQRRSENARRILRNPGIVLDLITREKSVFDARDVAKVLHRY IDDPGLFPQLTARIIQNPEVLRLQRDTIEFSTGEKVPARYSTRAMIRLEATMVRQALWLS NRDGHAVSEAALDATFRRHERLSQEQKAAIERIAGSARIAAVVGRAGAGKTTMMKAAREA WELAGYRVVGGALAGKAAEGLEKEAGIESRTLASWELRWNRGRDVLDNKTVFVMDEAGMV ASKQMAGFVDAVVRGGAKIVLVGDPEQLQPIEAGAAFRAIVDRIGYAELETIYRQREDWM RKASLDLARGNVEKALTAYDANVRITGTRLKTEVVERLIGDWNRDYDQTKTTLILAHLRR DVRMLNIMAREKLVERGIVGEGHVFKTADGVRHFDAGDQIVFLKNEGSLGVKNGMIAHVI EAAPNRIVAVIGEGDQRRQVIVEQRFYSNLDHGYATTIHKSQGATVDRVKVLASLSLDRH LTYVAMTRHRDDLQLYYGRRSFAFNGGLAKVLSRRNAKETTLDYERGKLYREALRFAESR GLNIVQVARTLVRDRLDWTLRQKTRLVDLGQRLAVFAERLGLHHPPKTQTMKEAAPMVAG IKTFSGSVADTVEQKLDTDPALRQQWEEVSTRFAYVFADPETAFRAMNFDAVLADKETAK LALQTLTIAPASIGQLRGKTGILASKTEREDRRVADLNVPALKRDLEQYLRMRETAVQRL QADEQALRQRGSIDIPALSPAAHVVLERVRDAIDRNDLPAAMAYALSNRETRLEIDGFNQ AVTDRFGERILLTNAAREPSGTLFDKLSEGMQPEQKERLKEAWPIMRTAQQLAAHERTVQ TLRQAEDLRLAQRQTPVMKQ

Reference
N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
N/A

N/A

Information of plasmid

ID	1281
Plasmid name	pBSY16_2
GenBank accession number	NZ_CP016451.1
Genome size	258555 bp
Coordinate of oriT [Strand]	167895..167938 [+]
Drug resistance	_
Heavy-metal resistance	_
Virulence factor	_
Xenobiotic degradation	_
Host bacterium [NCBI Taxonomy ID]	SinoRhizobium sp. RAC02 [1842534]

Reference
N/A