oriTDB
The information of the oriT region
oriTDB accession number 100821
Name oriT_pBSY16_2  insolico
Sequence Completeness core
oriT length 44 nt
oriT sequence GGATCCAAGGGCGCAATTATACGTCGCTGATGCGACGTGCTTGC
IR (inverted repeat)[22-27] [32-37] nt  (CGTCGC..GCGACG)
Location of nic site [11-12] nt
Conserved sequence flanking the
  nic site 		_
Note predicted by the oriTfinder
L:22-27;R:32-37;D:11-12
Visualization of oriT structure
Reference
 N/A
I. Information of Relaxase
ID 893
Name TraA_pBSY16_2 insolico
GenBank accession number WP_069061854
Family MOBQ
Length 1100 aa
UniProt ID _
PDB ID _
Pfam MobA_MobL [PF03389.14], Evalue: 3.80E-77, Aligned region: 17..243
AAA_30 [PF13604.5], Evalue: 3.10E-56, Aligned region: 381..569
AAA_19 [PF13245.5], Evalue: 8.40E-10, Aligned region: 386..513
Viral_helicase1 [PF01443.17], Evalue: 8.70E-05, Aligned region: 660..737
Note putative relaxase
Protein sequence [Download] MAIAHFSASIVSRGGGRSVVLSAAYRHCAKMEYEREARTIDYTRKEGLLHEEFMLPADAP
KWVRALIADRSVAGASEAFWNKVEAFEKRSDAQLARDLTIALPLELTPEQNIALVRDFVA
KHIHAKGMVADWVYHDNPGNPHIHLMTTLRPLTEDGFGSKKVAVIGEHGQPVRTKSGKIL
YELWAGSTDDFNSLRDGWFERLNHHLALGGIDLKIDGRSYEKQGIELEPTIHLGVGAKAI
ERKAQEQGVRPELERIELNEQRRSENARRILRNPGIVLDLITREKSVFDARDVAKVLHRY
IDDPGLFPQLTARIIQNPEVLRLQRDTIEFSTGEKVPARYSTRAMIRLEATMVRQALWLS
NRDGHAVSEAALDATFRRHERLSQEQKAAIERIAGSARIAAVVGRAGAGKTTMMKAAREA
WELAGYRVVGGALAGKAAEGLEKEAGIESRTLASWELRWNRGRDVLDNKTVFVMDEAGMV
ASKQMAGFVDAVVRGGAKIVLVGDPEQLQPIEAGAAFRAIVDRIGYAELETIYRQREDWM
RKASLDLARGNVEKALTAYDANVRITGTRLKTEVVERLIGDWNRDYDQTKTTLILAHLRR
DVRMLNIMAREKLVERGIVGEGHVFKTADGVRHFDAGDQIVFLKNEGSLGVKNGMIAHVI
EAAPNRIVAVIGEGDQRRQVIVEQRFYSNLDHGYATTIHKSQGATVDRVKVLASLSLDRH
LTYVAMTRHRDDLQLYYGRRSFAFNGGLAKVLSRRNAKETTLDYERGKLYREALRFAESR
GLNIVQVARTLVRDRLDWTLRQKTRLVDLGQRLAVFAERLGLHHPPKTQTMKEAAPMVAG
IKTFSGSVADTVEQKLDTDPALRQQWEEVSTRFAYVFADPETAFRAMNFDAVLADKETAK
LALQTLTIAPASIGQLRGKTGILASKTEREDRRVADLNVPALKRDLEQYLRMRETAVQRL
QADEQALRQRGSIDIPALSPAAHVVLERVRDAIDRNDLPAAMAYALSNRETRLEIDGFNQ
AVTDRFGERILLTNAAREPSGTLFDKLSEGMQPEQKERLKEAWPIMRTAQQLAAHERTVQ
TLRQAEDLRLAQRQTPVMKQ
Reference
 N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
 N/A
 N/A
Information of plasmid
ID 1281
Plasmid name pBSY16_2
GenBank accession number NZ_CP016451.1
Genome size 258555 bp
Coordinate of oriT  [Strand] 167895..167938 [+]
Drug resistance _
Heavy-metal resistance _
Virulence factor _
Xenobiotic degradation _
Host bacterium [NCBI Taxonomy ID] SinoRhizobium sp. RAC02 [1842534]
Reference
 N/A

Microbial Bioinformatics Group in MML, SJTU