oriTDB
The information of the oriT region
oriTDB accession number 100811
Name oriT_pSLy5  insolico
Sequence Completeness intact
oriT length 174 nt
oriT sequence GGTGTCGGGGCGCAGCCCTGAACCAGTCACGTAGCGCTAGCGGAGTGTATACTGGCTTAT TATGTAGGCACGGGTGCGGGAATCAGTGAAGTGCTTCATGTGGCAGGAGGAAAATGCAGC AGCAGAGCGTAAGCGGAATATATGAGACAGGAGATATTCCGCTTCCTCGCTCAC
IR (inverted repeat)[2-11] [15-24] nt  (GTGTCGGGGC..GCCCTGAACC)
Location of nic site [40-41] nt
Conserved sequence flanking the
  nic site 		CTAG|CGGA
Note predicted by the oriTfinder
L:2-11;R:15-24;D:40-41
Visualization of oriT structure
Reference
 N/A
I. Information of Relaxase
ID 883
Name Nuclease_pSLy5 insolico
GenBank accession number WP_000635804
Family MOBP
Length 517 aa
UniProt ID _
PDB ID _
Pfam Relaxase [PF03432.13], Evalue: 7.50E-20, Aligned region: 49..246
Note putative relaxase
Protein sequence [Download] MIVKFHARGKGGGSGPVDYLLGRERNREGATVLQGNPEEVRELIDATPFAKKYTSGVLSF
AEKELPPGGREKVMASFERVLMPGLEKNQYSILWVEHQDKGRLELNFVIPNMELQTGKRL
QPYYDRADRPRIDAWQTLVNHHYGLHDPNAPENRRTLTLPDNLPETKQALAEGVTRGIDA
LYHAGEIKGRQDVIQALTEAGLEVVRVTRSSISIADPNGGKNIRLKGAFYEQSFADGRGV
REKAERESRIYRENAEQRVQEARRICKRGCDIKRDENQRRYSPVHSLDRGIAGKTPGRGE
RGDDAAQEGRVKAGREYGHDVTGDSLSPVYREWRDALVSWREDTGEPGRNQEAGRDIAET
EREDMGRGVCAGREQEIPCPSVREISGGDSLSGERVGTSEGVTQSDRAGNTFAERLRAAA
TGLYAAAERMGERLRGIAEDVFAYATGQRDAERAGHAVESAGAALERADRTLEPVIQREL
EIREERLIQEREHVLSLERERQPEIQERTLDGPSLGW
Reference
 N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
 N/A
 N/A
Information of plasmid
ID 1271
Plasmid name pSLy5
GenBank accession number NZ_CP015917.1
Incompatibility group ColRNAI
Genome size 8972 bp
Coordinate of oriT  [Strand] 8024..8197 [-]
Drug resistance _
Heavy-metal resistance _
Virulence factor _
Xenobiotic degradation _
Host bacterium [NCBI Taxonomy ID] Escherichia coli 210205630 [562]
Reference
 N/A

Microbial Bioinformatics Group in MML, SJTU