oriTDB
The information of the oriT region
oriTDB accession number 100795
Name oriT_pEC745_OXA48  insolico
Sequence Completeness core
oriT length 105 nt
oriT sequence AGTACGGGACAAGATGTGTTTTTGGTACACCGCCGGCACGCCGGCAGTGACGCAAAAACG TCTTGGTCAGGGCAAGCCCCGACACCCCCTAACGAGGTTAGCTAT
IR (inverted repeat)[18-35] [42-59] nt  (GTTTTTGGTACACCGCCG..CGGCAGTGACGCAAAAAC)
Location of nic site _
Conserved sequence flanking the
  nic site 		_
Note predicted by the oriTfinder
L:18-35;R:42-59
Visualization of oriT structure
Reference
 N/A
I. Information of Relaxase
ID 867
Name Putative relaxase of pEC745_OXA48 insolico
GenBank accession number WP_004206924
Family MOBP
Length 659 aa
UniProt ID _
PDB ID _
Pfam Relaxase [PF03432.13], Evalue: 1.70E-30, Aligned region: 13..334
Note putative relaxase
Protein sequence [Download] MVIPKIIEGRRDKKSSFGQLIKYMADKPSQELTDTVQPTPETALAVKSDMFEGLNNYLTR
KQKVISTPVDVEPGVQRVVVGDVTCQYNTFSLDGAAQEMNSVSQQSTRCKDPVMHYVLSW
PDYEKPNDDQVFDSVKFTLASMGMSDHQYVAAIHRDTDNLHVHVAVNRINPQTYKAASSS
FTKDTLHQACRLLELKNGWSHSNGAYVVNDRQQIVRNPHSKKERGNWRSLDRINKMENKE
GVETLYRYIVGDEQVGGSRQNLIHVSAGLREAKSWDDVHKTFAGIGLRVEKAQGKKGYVI
THEHQNQKTAVKASLVFNKAQYTLKSMEERFGEYQPSHIEPAKVSVFKTAYTPGAYRRDA
NKRLQRKIERAEERMLLKGRYRAYRNNLPIYSPDKDRIADEYRKIAQHTRLVKNNVRHSV
SDPHTRKLMYNLAEFKRLQAVANLRLSLREERNGFRAANPRLSYREWVEQEALKGDKAAL
SQMRGFAYSSRKKEKYKQQLVEQIGFNRTFNAITSHDRDDVAVMASARHGVKPRLLKDGT
VIFERDGKPVAADRGHIVLTESNGIDKEKTADLAIALTIAGKAKSVRVDGDGEFKELCCN
RIVDAAVNHNHPVAQGITFTDAAQQAYAQNEKHRLIREQNNSKNEMQLRSESDDKFNPK
Reference
 N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
 N/A
 N/A
Information of plasmid
ID 1255
Plasmid name pEC745_OXA48
GenBank accession number NZ_CP015071.1
Incompatibility group IncL/M(pMU407)
Genome size 69471 bp
Coordinate of oriT  [Strand] 28728..28832 [-]
Drug resistance _
Heavy-metal resistance _
Virulence factor _
Xenobiotic degradation _
Host bacterium [NCBI Taxonomy ID] Escherichia coli Ecol_743 [562]
Reference
 N/A

Microbial Bioinformatics Group in MML, SJTU