 oriTDB accession number | 100776 |
| Name | oriT_pUSA06-1-SUR9  |
Sequence Completeness  | core |
| oriT length | 53 nt |
| oriT sequence | CCAGCAAGCCGGTATATTCAGAACGAAGTGGCTAGAATATACGACGCTTGCCA |
| IR (inverted repeat) | [12-19] [35-42] nt (GTATATTC..GAATATAC) |
| Location of nic site | [50-51] nt |
| Conserved sequence flanking the nic site | CGCTTG|CCA |
| Note | predicted by the oriTfinder |
Visualization of oriT structure Reference| ID | 848 |
| Name | Rlx_pUSA06-1-SUR9 |
| GenBank accession number | WP_000246202 |
| Family | MOBP |
| Length | 320 aa |
| UniProt ID | A0A0U2YPT6 |
| PDB ID | _ |
| Pfam | Relaxase [PF03432.13], Evalue: 5.80E-79, Aligned region: 8..238 |
| Note | putative relaxase |
| Protein sequence [Download] | MATTKLGNTKSASRAINYAEERAEEKSGLNCDVDYAKSYFKQTRALYGKENGVQAHTVIQ SFKPGEVTAKECNEIGLELAKKIAPDYQVAVYTHTDKDHYHNHIIINSVNLETGNKYQSN KEQRDFIKKANDQLCEERGLSVPEKSSEIRYTLAEQNMIDKDKRSWKNDIRMAVEETKDN AVDFEEFNTLLKEKGVEITRVTKNNVTYRHIEEDKKVRGNKLGDSYDKGVIENGFAIEKF RREREEEREYDEYADTFEVDWDAVAENSEDLRKRRIARTEETKQASNKIYIRDERTTGLE RKGIAGNQVEFEKDDGGLSR |
Reference| ID | 1236 |
| Plasmid name | pUSA06-1-SUR9 |
| GenBank accession number | NZ_CP014396.1 |
| Genome size | 4397 bp |
| Coordinate of oriT [Strand] | 4022..4074 [-] |
| Drug resistance | _ |
| Heavy-metal resistance | _ |
| Virulence factor | _ |
| Xenobiotic degradation | _ |
| Host bacterium [NCBI Taxonomy ID] | Staphylococcus aureus USA300-SUR9 [1280] |
Reference| [1] Sabat AJ et al (2017) Complete-genome sequencing elucidates outbreak dynamics of CA-MRSA USA300 (ST8-spa t008) in an academic hospital of Paramaribo, Republic of Suriname. Sci Rep. 7:41050. [PMID:28106148] |