oriTDB
The information of the oriT region
oriTDB accession number 100773
Name oriT_pFB7  insolico
Sequence Completeness intact
oriT length 103 nt
oriT sequence AGCCTCGCAGAGCAGGATTCCCGTTGAGTGCCGAAGGTACGAATAAGGGAAAGTGAAGAA GGAACACCGGATTTCCGGTGGGCCTACTTCACATATCCTGCCC
IR (inverted repeat)[53-70] [75-92] nt  (GTGAAGAAGGAACACCGG..CCGGTGGGCCTACTTCAC)
Location of nic site [100-101] nt
Conserved sequence flanking the
  nic site 		TATCCTG|C
Note predicted by the oriTfinder
L:53-70;R:75-92;D:100-101
Visualization of oriT structure
Reference
 N/A
I. Information of Relaxase
ID 845
Name TraI_pFB7 insolico
GenBank accession number WP_088371470
Family MOBP
Length 830 aa
UniProt ID _
PDB ID _
Pfam Relaxase [PF03432.13], Evalue: 2.80E-52, Aligned region: 12..252
Note putative relaxase
Protein sequence [Download] MIAKHVPMRVVKKSDFRELVKYLSNQQGKQERVGCVTVTNCFQNNVLDAALEVQATQALN
TRSEADKTYHLLISFREGENPAPEILEVIESRVCAALGYADYQRVSVVHHDTDNLHIHVA
INKIHPKRYTIHTPYNDYKTLGEICKKLEREYGLEADNHTVRKTVGENRADDMERHAGVE
SLLGWIKRECTDQIKQAQSWSELYAVMQRNGLEIRERGNGLVITNGVGQSVKASSVARDF
SKAKLEARFGAFESFVKQAPSVSSVHARRIQAPLVEKVGRRPPPRSKGRTPSLSSVGVLH
VNSGIRYEQRPIYVKQANTAELYAMYKLEQQDLGAVRNVAIARARTKRDRKIEATKRLGR
IKRAAIKLMRGPGVNKKLLYALARKSLKEGVQKANTDYLKARDAAYATYHRRVWADWLQV
QATQGNAEALAALRAREMRQWWSCNIFGGLQARRTGPVPGLKPDNITKAGTVIYRVGSTA
IRDDGDLLNVSHGAGDYGVEAALRMAMYRYGERITVKGSDEFKKRVVQIAAAARLNISFD
DEVLDKRRKQLVSDAAVIVKLTDAMLSDKTAQFTQAQASRVGAFQEDALSEYDAAISRSI
NLANQEQINEQQRTRAKHYFVQRWSDRGGPNSRRDGHATRIRSGGGGSGKHGASGATVIS
SAGGFNKPNVGGIGAKPPPASTHRLRNLHQLGVVQFSRGSEVLLPRHVSDCVGEQQTERN
HRVRRDVHTAGITSSELMAVDKYIAERELKRVTMFDIMKHRRYNEDDAGMVKFAGLRQVD
GKSLVLLKRNDEVIVLAIDVATARRMKRFSLGDEVLLTNKGTLKTKGRNR
Reference
 N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
 N/A
 N/A
Information of plasmid
ID 1233
Plasmid name pFB7
GenBank accession number NZ_CP014330.1
Genome size 39400 bp
Coordinate of oriT  [Strand] 29581..29683 [+]
Drug resistance _
Heavy-metal resistance _
Virulence factor _
Xenobiotic degradation _
Host bacterium [NCBI Taxonomy ID] Xylella fastidiosa FB7 [2371]
Reference
 N/A

Microbial Bioinformatics Group in MML, SJTU