oriTDB

The information of the oriT region

oriTDB accession number	100773
Name	oriT_pFB7
Sequence Completeness	intact
oriT length	103 nt
oriT sequence	AGCCTCGCAGAGCAGGATTCCCGTTGAGTGCCGAAGGTACGAATAAGGGAAAGTGAAGAA GGAACACCGGATTTCCGGTGGGCCTACTTCACATATCCTGCCC
IR (inverted repeat)	[53-70] [75-92] nt (GTGAAGAAGGAACACCGG..CCGGTGGGCCTACTTCAC)
Location of nic site	[100-101] nt
Conserved sequence flanking the nic site	TATCCTG\|C
Note	predicted by the oriTfinder
	L:53-70;R:75-92;D:100-101

Visualization of oriT structure

1...5....10....15....20....25....30....35....40....45....50....55....60

1

AGCCTCGCAGAGCAGGATTCCCGTTGAGTGCCGAAGGTACGAATAAGGGAAAGTGAAGAA

61

GGAACACCGGATTTCCGGTGGGCCTACTTCACATATCCTGCCC

Reference
N/A

I. Information of Relaxase

ID	845
Name	TraI_pFB7
GenBank accession number	WP_088371470
Family	MOB_P
Length	830 aa
UniProt ID	_
PDB ID	_
Pfam	Relaxase [PF03432.13], Evalue: 2.80E-52, Aligned region: 12..252
Note	putative relaxase
Protein sequence [Download]	MIAKHVPMRVVKKSDFRELVKYLSNQQGKQERVGCVTVTNCFQNNVLDAALEVQATQALN TRSEADKTYHLLISFREGENPAPEILEVIESRVCAALGYADYQRVSVVHHDTDNLHIHVA INKIHPKRYTIHTPYNDYKTLGEICKKLEREYGLEADNHTVRKTVGENRADDMERHAGVE SLLGWIKRECTDQIKQAQSWSELYAVMQRNGLEIRERGNGLVITNGVGQSVKASSVARDF SKAKLEARFGAFESFVKQAPSVSSVHARRIQAPLVEKVGRRPPPRSKGRTPSLSSVGVLH VNSGIRYEQRPIYVKQANTAELYAMYKLEQQDLGAVRNVAIARARTKRDRKIEATKRLGR IKRAAIKLMRGPGVNKKLLYALARKSLKEGVQKANTDYLKARDAAYATYHRRVWADWLQV QATQGNAEALAALRAREMRQWWSCNIFGGLQARRTGPVPGLKPDNITKAGTVIYRVGSTA IRDDGDLLNVSHGAGDYGVEAALRMAMYRYGERITVKGSDEFKKRVVQIAAAARLNISFD DEVLDKRRKQLVSDAAVIVKLTDAMLSDKTAQFTQAQASRVGAFQEDALSEYDAAISRSI NLANQEQINEQQRTRAKHYFVQRWSDRGGPNSRRDGHATRIRSGGGGSGKHGASGATVIS SAGGFNKPNVGGIGAKPPPASTHRLRNLHQLGVVQFSRGSEVLLPRHVSDCVGEQQTERN HRVRRDVHTAGITSSELMAVDKYIAERELKRVTMFDIMKHRRYNEDDAGMVKFAGLRQVD GKSLVLLKRNDEVIVLAIDVATARRMKRFSLGDEVLLTNKGTLKTKGRNR

Reference
N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
N/A

N/A

Information of plasmid

ID	1233
Plasmid name	pFB7
GenBank accession number	NZ_CP014330.1
Genome size	39400 bp
Coordinate of oriT [Strand]	29581..29683 [+]
Drug resistance	_
Heavy-metal resistance	_
Virulence factor	_
Xenobiotic degradation	_
Host bacterium [NCBI Taxonomy ID]	Xylella fastidiosa FB7 [2371]

Reference
N/A