oriTDB
The information of the oriT region
oriTDB accession number 100770
Name oriT_pJJ1887-3  insolico
Sequence Completeness intact
oriT length 84 nt
oriT sequence GGGGTGTCGGGGCGAAGCCCTGACCCAGTCACGTAGCGATAGCGGAGTGTATACTGGCTT AACCATTCGGCATCAGTGCGGATT
IR (inverted repeat)[3-12] [16-25] nt  (GTGTCGGGGC..GCCCTGACCC)
Location of nic site [56-57] nt
Conserved sequence flanking the
  nic site
CTGG|CTTA
Note predicted by the oriTfinder
L:3-12;R:16-25;D:56-57
Visualization of oriT structure
Reference
 N/A
I. Information of Relaxase
ID 842
Name MobC_pJJ1887-3 insolico
GenBank accession number WP_000955999
Family Other
Length 107 aa
UniProt ID _
PDB ID _
Pfam MobC [PF05713.10], Evalue: 1.20E-12, Aligned region: 50..94
Note putative relaxase
Protein sequence [Download] MLTIRVTDDEHARLLERCEGKQLAVWMRRVCLGEPVARSGKLPTLAPPLLRQLAAIGNNL
NQTARKVNSGQWSSGDRVQVVAALMAIGDELRRLRLAVREQGARDDS
Reference
 N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
 N/A
 N/A
Information of plasmid
ID 1230
Plasmid name pJJ1887-3
GenBank accession number NZ_CP014319.1
Incompatibility group ColRNAI
Genome size 5631 bp
Coordinate of oriT  [Strand] 5253..5336 [+]
Drug resistance _
Heavy-metal resistance _
Virulence factor _
Xenobiotic degradation _
Host bacterium [NCBI Taxonomy ID] Escherichia coli JJ1887 [1355101]
Reference
[1] Johnson TJ et al (2016) Complete Genome Sequence of a CTX-M-15-Producing Escherichia coli Strain from the H30Rx Subclone of Sequence Type 131 from a Patient with Recurrent Urinary Tract Infections, Closely Related to a Lethal Urosepsis Isolate from the Patient's Sister. Genome Announc. 4(3). [PMID:27174264]