oriTDB
The information of the oriT region
oriTDB accession number 100755
Name oriT_PDM02  insolico
Sequence Completeness intact
oriT length 103 nt
oriT sequence TCAGCTCCTTACTGGGGTGTCGGGGCGAAGCCCTGACCAGGAGGCAATTGTATAATCGCG CGTGCGCGGTTATACAATTGCACATCCTGTCCCGTTTTTCAGG
IR (inverted repeat)IR1: [19-26] [30-37] nt  (GTCGGGGC..GCCCTGAC)
IR2: [44-58] [67-81] nt  (GCAATTGTATAATCG..CGGTTATACAATTGC)
Location of nic site [89-90] nt
Conserved sequence flanking the
  nic site 		CATCCTG|T
Note predicted by the oriTfinder
L:19-26;R:30-37;L:44-58;R:67-81;D:89-90
Visualization of oriT structure
Reference
 N/A
I. Information of Relaxase
ID 827
Name NikB_PDM02 insolico
GenBank accession number WP_001354015
Family MOBP
Length 899 aa
UniProt ID _
PDB ID _
Pfam Relaxase [PF03432.13], Evalue: 7.60E-64, Aligned region: 47..315
Note putative relaxase
Protein sequence [Download] MNAVIPKKRRDGKSSFEDLVSYVSVRDDMTDEELDLSSSSQAEQPHRSRFSRLVDYATRL
RNESFVALVDVMKDGCEWVNFYGVTCFHNCTSLETAAADMEYIARQAHYAKDDTDPVFHY
ILSWQSHESPRPEQIYDSVRHTLKSLGLADHQYVSAVHTDTDNLHVHVAVNRVHPETGYL
NRLSWSQEKLSRACRELELKHGFAPDNGCWVHAPGNRIVRKTAVERDRQNAWTRGKKQTF
REYVAQTAVAGLRSEPVHDWLSLHRRLAEDGLYLSQMDGKFLVMDGWDRNREGVQLDSFG
PSWCAEKLMKKMGDYTPVPKDIFSQVEAPGRYNPDFIAADVRPEKIAETESLQQYACRHL
GERLPEMAREGRLENCLAIHRTLAEAGLWMRVQHGHLVICDGYDHNQTPVRADSVWSLLT
LDNVNQLDGGWQPVPTDIFRQVTPTERFRGRRMESCPATDKEWHRMRTGTGPQGAIKREL
FSDKESLWGYSISHCSPQIEEMITQGEFTWQRCHELFAQQGLMLQKQHHGLVVVDAFNHE
QTPVKASSIHPDLTLGRAEPQAGPFVSAPADLFDRVQPENRYNPELAVSDRYGVSSKRDP
MLRRQRREARAEARADLRARYLAWREQWRKPDLRYGERCREIHQACRLRKSHIRAQYDDP
ALRKLHYHIAEVQRMQALIRLKEDIRDERQKLIADGKWYPPSYRQWVEIQAAQGDRAAVS
QLRGWDYRDRRKDKSRTTTTDRCVVLCEPGGTPVYGNTGDLEARLQKNGSVRFRDRRTGE
FVCTDYGDRVVFRNHHDRNALADKLDLIAPVLFGRDPRMGFEPEGNDKQFNQVFAEMVAW
HNVTGRTGHEDYRITRPDVDHHREGSERYYRDYIAANSNDDASLPPPEQDKRWEPPSPG
Reference
 N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
 N/A
 N/A
Information of plasmid
ID 1215
Plasmid name PDM02
GenBank accession number NZ_CP013221.1
Incompatibility group IncI1
Genome size 112176 bp
Coordinate of oriT  [Strand] 36168..36270 [+]
Drug resistance _
Heavy-metal resistance _
Virulence factor _
Xenobiotic degradation _
Host bacterium [NCBI Taxonomy ID] Salmonella enterica subsp. enterica serovar Anatum strain GT-01 [58712]
Reference
[1] Marasini D et al (2016) Complete Genome Sequences of Salmonella enterica Serovars Anatum and Anatum var 15+, Isolated from Retail Ground Turkey. Genome Announc. 4(1). [PMID:26798111]

Microbial Bioinformatics Group in MML, SJTU