oriTDB

The information of the oriT region

oriTDB accession number	100754
Name	oriT_pCFNEI_73-B
Sequence Completeness	core
oriT length	34 nt
oriT sequence	CCAAGGGCGCAATTATACGTCGCTGGCGCGACGT
IR (inverted repeat)	[17-23] [28-34] nt (ACGTCGC..GCGACGT)
Location of nic site	[7-8] nt
Conserved sequence flanking the nic site	AGGG\|CGCA
Note	predicted by the oriTfinder
	L:17-23;R:28-34;D:7-8

Visualization of oriT structure

1...5....10....15....20....25....30....35....40....45....50....55....60

1

CCAAGGGCGCAATTATACGTCGCTGGCGCGACGT

Reference
N/A

I. Information of Relaxase

ID	826
Name	TraA_pCFNEI_73-B
GenBank accession number	WP_037390291
Family	MOB_Q
Length	1103 aa
UniProt ID	_
PDB ID	_
Pfam	MobA_MobL [PF03389.14], Evalue: 4.90E-74, Aligned region: 17..243 AAA_30 [PF13604.5], Evalue: 1.40E-56, Aligned region: 381..569 AAA_19 [PF13245.5], Evalue: 3.20E-09, Aligned region: 386..513
Note	putative relaxase
Protein sequence [Download]	MAVPHFSVSIVARGSGRSAVLSAAYRHCAKMGFEREARTIDYTRKQGLLHEEFVVPADAP EWLRAMIADHSVSGASEAFWNKVEGFEKRADAQLAKDITIALPIELSTEQNIVLIRDFID RHVTSKGMVADWVYHDAPGNPHVHLMTTLRPLTEDGFGAKKIAVLGPDGTPIRNNSGKIL YELWAGSAADFNAFRDGWFACQNKHLSLAGLDIRIDGRSFEKQGIELTPTIHLGVGAKAI ERKPAEAGRDISLERLELQEERRGENARRIQRRPEIVLDLITREKSVFDERDVAKILHRY FDDAGRFHSLMARILQSPETLRLERERIDFASGLRAPAKYTTRELIRLEAEMADRANWLS LQSSHGIRDAVLEATFARHTRLSEEQKAAIAHVVAGERIAAVIGRAGAGKTTMMKAAREA WEAAGYRVVGGALAGKAAEGLEKEAGILSRTLSSWELRWSEGRDLIHDRTVFVLDEAGMV SSRQMALFVETATKAGAKLVLIGDPQQLQPIEAGAAFRAIADRIGYAELGTIYRQREQWM RDASLDLARGNVGKAVEAYRAHGHVTGSALKTEAMQALITDWNRDYDPTRTSLILAHLRR DVRMLNEMARAKLVERGIVDEGFAFRTEDGSRKFATGDQIVFLKNEGALGVKNGMLAKVV DAAPGRIVAEVGEAEHRRRVTVESRFYNNVDLGYATTIHKSQGVTVDRVKVLASLSLDRH LAYVAMTRHREDLAIYYGRRSFAKAGGLIPILSRKNAKETTLDYANGRLYRQALRFARAR GFHLVSVARTLVRDRLEWTVRQKSRFAELGARLSAIAGKLGLSAAAAGTSQPRTVKELKP MVSGITTFAKSLEQAVEDRLAADPGLMKQWQEVSARFHLVYAQPEAAFKAADVDAMLKDG AAAKTTISRIGSEPKAFGPLKGKTGMLVSRAEKQTRETAIANAPALARNLERYLRQRTVA ARKYVIEERAMRLKVAFHIPALSPAAKQTLERVRDAIDRNDLPAGLEYAVADKMVKAELE GFSRAVSERFGERTFLPLAAKDTGGQAFQSVSDGMSEAQKAELQSAWNSMRTVQQLAAHE RTAEALKQAETMRQTKSQGLSLK

Reference
N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
N/A

N/A

Information of plasmid

ID	1214
Plasmid name	pCFNEI_73-B
GenBank accession number	NZ_CP013109.1
Genome size	586526 bp
Coordinate of oriT [Strand]	42023..42056 [-]
Drug resistance	_
Heavy-metal resistance	_
Virulence factor	_
Xenobiotic degradation	_
Host bacterium [NCBI Taxonomy ID]	Sinorhizobium americanum CFNEI 73 [194963]

Reference
N/A