oriTDB
The information of the oriT region
oriTDB accession number 100752
Name oriT_pCCGM7-A  insolico
Sequence Completeness core
oriT length 57 nt
oriT sequence GCAGGAAAATGGCGTAGCACATTTTTCCGTATCCTGCCTCTCTAGATTGTAAGGGGA
IR (inverted repeat)[4-14] [18-28] nt  (GGAAAATGGCG..CACATTTTTCC)
Location of nic site [36-37] nt
Conserved sequence flanking the
  nic site 		TATCCTG|C
Note predicted by the oriTfinder
L:4-14;R:18-28;D:36-37
Visualization of oriT structure
Reference
 N/A
I. Information of Relaxase
ID 824
Name MobC_pCCGM7-A insolico
GenBank accession number WP_037382731
Family Other
Length 133 aa
UniProt ID A0A1L3L8I3
PDB ID _
Pfam MobC [PF05713.10], Evalue: 1.40E-07, Aligned region: 72..121
Note putative relaxase
Protein sequence [Download] MDEGKFNALLEPPKKDRTVHVRVTADEHAAIEKAAADAGMTVSSFFRSLNMEGAGVRPIL
TRDDRLVMAALLEDMRMIGINLNQVARALNSGRGVHPSELDINLENVQRVQAAVMSELRA
LTQRAGYQRRGET
Reference
 N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
 N/A
 N/A
Information of plasmid
ID 1212
Plasmid name pCCGM7-A
GenBank accession number NZ_CP013052.1
Genome size 405481 bp
Coordinate of oriT  [Strand] 80091..80147 [-]
Drug resistance _
Heavy-metal resistance _
Virulence factor _
Xenobiotic degradation insolico putrescine degradation
Host bacterium [NCBI Taxonomy ID] Sinorhizobium americanum CCGM7 [1408224]
Reference
 N/A

Microbial Bioinformatics Group in MML, SJTU