oriTDB
The information of the oriT region
oriTDB accession number 100741
Name oriT_p33676_4.5  insolico
Sequence Completeness intact
oriT length 83 nt
oriT sequence GGGTGTCGGGGCGCAGCCCTGACCCAGTCACGTAGCGATAGCGGAGTGTATACTGGCTTA ACTATGTGGCATCAGTGCGGATT
IR (inverted repeat)[3-12] [16-25] nt  (GTGTCGGGGC..GCCCTGACCC)
Location of nic site [56-57] nt
Conserved sequence flanking the
  nic site 		CTGG|CTTA
Note predicted by the oriTfinder
L:3-12;R:16-25;D:56-57
Visualization of oriT structure
Reference
 N/A
I. Information of Relaxase
ID 813
Name Nuclease_p33676_4.5 insolico
GenBank accession number WP_000635819
Family MOBP
Length 529 aa
UniProt ID D5I152
PDB ID _
Pfam Relaxase [PF03432.13], Evalue: 3.10E-19, Aligned region: 49..246
Note putative relaxase
Protein sequence [Download] MIVKFHARGKGGGSGPVDYLLGRERNREGATVLRGNPEEIRELIDATPFSKKYTSGVLSF
AEKELPPGERERVMTSFERVLMPGLEKDQYSILWVEHQDKGRLELNFVIPNMELQSGKRL
QPYYDRADRPRINAWQTLVNHHYGLRDPNAPENRRTLVTPNNLPKAKQEAAEAITRGLEA
LYRAGAIKTRQDVTEALTAAGFEVVRTTRSSISIADPEGGRNLRLKGALYEQSFTNGNGL
REETERASRFYREHAEQRVQEARRVCRQGTELKQAENQRRYQRTYNIRETATGYAEHHRE
HAAQHHRGRTVPAAEKPALAGDQRAGTVSGADRAQRHGRHFPGVLGADSVAGKQDCEKYL
DHQRAGKHAGETRGKNLGGDVRQWREREISGAAGRGERGKHLDGGRQERREAGQGVNEYD
GTGRAFAERLRAFATGLYAAAERVGERLRRIAEDARGYATEQRDTERACRELESAGAAIS
RTSRPLESVIYHEQQIRDEQERQAQELARRWHEEQEPEARIWRGPSMGM
Reference
 N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
 N/A
 N/A
Information of plasmid
ID 1201
Plasmid name p33676_4.5
GenBank accession number NZ_CP012684.1
Incompatibility group ColRNAI
Genome size 4512 bp
Coordinate of oriT  [Strand] 80..162 [-]
Drug resistance _
Heavy-metal resistance _
Virulence factor _
Xenobiotic degradation _
Host bacterium [NCBI Taxonomy ID] Salmonella enterica subsp. enterica serovar Typhimurium strain 33676 [90371]
Reference
 N/A

Microbial Bioinformatics Group in MML, SJTU