oriTDB
The information of the oriT region
oriTDB accession number 100734
Name oriT_pKLDS6.0933-2  insolico
Sequence Completeness incomplete
oriT length 46 nt
oriT sequence TCATAGAATAATTCTTTGTTTTCTTCAATCGATTCAATAGAAATAT
IR (inverted repeat)IR1: [2-9] [11-18] nt  (CATAGAAT..ATTCTTTG)
IR2: [24-30] [31-37] nt  (TTCAATC..GATTCAA)
Location of nic site _
Conserved sequence flanking the
  nic site 		_
Note predicted by the oriTfinder
L:2-9;R:11-18;L:24-30;R:31-37
Visualization of oriT structure
Reference
 N/A
I. Information of Relaxase
ID 806
Name Mob_pKLDS6.0933-2 insolico
GenBank accession number WP_053109534
Family MOBV
Length 399 aa
UniProt ID _
PDB ID _
Pfam Mob_Pre [PF01076.18], Evalue: 8.60E-29, Aligned region: 1..180
Note putative relaxase
Protein sequence [Download] MAHLKKNTRGAVPGLAVHFERKTDHHTNKEIDVSKAYLNQDLMADGSDMLSRFNARLNDV
YCMKRDDVKALAIWIVTLPEELAEAPYEQQSAFFEATTAFLNDRYGQENAVAAVVHYDET
TPHLHYAFVPVVFDDKKSRYKVSAKEVLTRHDLQTFHEDLNQHLKKVLPFYEHGILNNKT
LPFENVAEIKKYNDQFNALKNELADVEENIRAKQAVLKITDRALTEVDLAEKQIDDFKQA
LSKNLFGKTVLKPDDLDRFKNVLATMKKATLQSQHETEELKQTLGQVKAQLADVQADYQN
LKETHQVLQKRQRDQQKLDYAMRDMLKNDYAVDKLSHTDVEARYVLYKLDHEELTQNKKE
AQSWLKTLTTARANPDTKIAPTRLDRGIEQVKALILFFI
Reference
 N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
 N/A
 N/A
Information of plasmid
ID 1194
Plasmid name pKLDS6.0933-2
GenBank accession number NZ_CP012368.1
Genome size 41490 bp
Coordinate of oriT  [Strand] 8614..8659 [-]
Drug resistance _
Heavy-metal resistance _
Virulence factor _
Xenobiotic degradation _
Host bacterium [NCBI Taxonomy ID] Enterococcus durans KLDS6.0933 [53345]
Reference
 N/A

Microbial Bioinformatics Group in MML, SJTU