oriTDB

The information of the oriT region

oriTDB accession number	100734
Name	oriT_pKLDS6.0933-2
Sequence Completeness	incomplete
oriT length	46 nt
oriT sequence	TCATAGAATAATTCTTTGTTTTCTTCAATCGATTCAATAGAAATAT
IR (inverted repeat)	IR1: [2-9] [11-18] nt (CATAGAAT..ATTCTTTG) IR2: [24-30] [31-37] nt (TTCAATC..GATTCAA)
Location of nic site	_
Conserved sequence flanking the nic site	_
Note	predicted by the oriTfinder
	L:2-9;R:11-18;L:24-30;R:31-37

Visualization of oriT structure

1...5....10....15....20....25....30....35....40....45....50....55....60

1

TCATAGAATAATTCTTTGTTTTCTTCAATCGATTCAATAGAAATAT

Reference
N/A

I. Information of Relaxase

ID	806
Name	Mob_pKLDS6.0933-2
GenBank accession number	WP_053109534
Family	MOB_V
Length	399 aa
UniProt ID	_
PDB ID	_
Pfam	Mob_Pre [PF01076.18], Evalue: 8.60E-29, Aligned region: 1..180
Note	putative relaxase
Protein sequence [Download]	MAHLKKNTRGAVPGLAVHFERKTDHHTNKEIDVSKAYLNQDLMADGSDMLSRFNARLNDV YCMKRDDVKALAIWIVTLPEELAEAPYEQQSAFFEATTAFLNDRYGQENAVAAVVHYDET TPHLHYAFVPVVFDDKKSRYKVSAKEVLTRHDLQTFHEDLNQHLKKVLPFYEHGILNNKT LPFENVAEIKKYNDQFNALKNELADVEENIRAKQAVLKITDRALTEVDLAEKQIDDFKQA LSKNLFGKTVLKPDDLDRFKNVLATMKKATLQSQHETEELKQTLGQVKAQLADVQADYQN LKETHQVLQKRQRDQQKLDYAMRDMLKNDYAVDKLSHTDVEARYVLYKLDHEELTQNKKE AQSWLKTLTTARANPDTKIAPTRLDRGIEQVKALILFFI

Reference
N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
N/A

N/A

Information of plasmid

ID	1194
Plasmid name	pKLDS6.0933-2
GenBank accession number	NZ_CP012368.1
Genome size	41490 bp
Coordinate of oriT [Strand]	8614..8659 [-]
Drug resistance	_
Heavy-metal resistance	_
Virulence factor	_
Xenobiotic degradation	_
Host bacterium [NCBI Taxonomy ID]	Enterococcus durans KLDS6.0933 [53345]

Reference
N/A