oriTDB

The information of the oriT region

oriTDB accession number	100732
Name	oriT_p34998-239.973kb
Sequence Completeness	intact
oriT length	551 nt
oriT sequence	GAGCAGAGCTATGTGTGACAAGAAGTATAGAGATTATGAGGTAGCCATCATGGTCGATGT GAACCCGTTTGACCGGGTTATGAATGAGTTGAAAAGTCGTGGCCGCAAGAACGCTCATAT CCTGAGCATCCTTCAATTCGACTGGCCCGCATCGGAGGTCATCATCGAGAAGCTGAGCTG TTACATCACAGATGGGATTAAGGCCAATCAGCAGCCTGTGATTTACCCGATCATTGAAGA AGCTCTGCATCGCTACAGCCAGCTCGTGTTTCATGAGCAGAGAGAAAAGTATGAGGACCC GGCCAGAATAGGGGCATTTCTGGAAACCCTGATCACTGAAACTTGCCGGGCGTTGGAAGT GCAAATTGTCGATAGTGGTGGCGATTCATGGTCTGTCGATTCAGGAGAGTCGTTCTCACT TTGGCTTTCTTCCCATCCAGGAGAACTATCCATTAACCCGCAGCCTCATGAGGATGAGAC CTCTTTGCGTGGCTTGCTGTATGAGCTCATCACCTGTGAGAGTGTGAAAACTGTTTTAAG GAGAACCGACT
IR (inverted repeat)	[62-69] [72-79] nt (AACCCGTT..ACCGGGTT)
Location of nic site	_
Conserved sequence flanking the nic site	_
Note	predicted by the oriTfinder
	L: 62-69;R:72-79

Visualization of oriT structure

1...5....10....15....20....25....30....35....40....45....50....55....60

1

GAGCAGAGCTATGTGTGACAAGAAGTATAGAGATTATGAGGTAGCCATCATGGTCGATGT

61

GAACCCGTTTGACCGGGTTATGAATGAGTTGAAAAGTCGTGGCCGCAAGAACGCTCATAT

121

CCTGAGCATCCTTCAATTCGACTGGCCCGCATCGGAGGTCATCATCGAGAAGCTGAGCTG

181

TTACATCACAGATGGGATTAAGGCCAATCAGCAGCCTGTGATTTACCCGATCATTGAAGA

241

AGCTCTGCATCGCTACAGCCAGCTCGTGTTTCATGAGCAGAGAGAAAAGTATGAGGACCC

301

GGCCAGAATAGGGGCATTTCTGGAAACCCTGATCACTGAAACTTGCCGGGCGTTGGAAGT

361

GCAAATTGTCGATAGTGGTGGCGATTCATGGTCTGTCGATTCAGGAGAGTCGTTCTCACT

421

TTGGCTTTCTTCCCATCCAGGAGAACTATCCATTAACCCGCAGCCTCATGAGGATGAGAC

481

CTCTTTGCGTGGCTTGCTGTATGAGCTCATCACCTGTGAGAGTGTGAAAACTGTTTTAAG

541

GAGAACCGACT

Reference
N/A

I. Information of Relaxase

ID	804
Name	TraI_p34998-239.973kb
GenBank accession number	WP_000909947
Family	MOB_H
Length	987 aa
UniProt ID	_
PDB ID	_
Pfam	TraI_2 [PF07514.10], Evalue: 1.50E-101, Aligned region: 44..362
Note	putative relaxase
Protein sequence [Download]	MLKALHKLFGGRSGAIETAPSARVLPLKDVEDEEIPRYPPFAKGLPVAPLDKILATQAEL IEKVRNSLGFTVDDFNRLVLPVIQRYAAFVHLLPASESHHHRGAGGLFRHGLEVAFWATQ ASESVIFSIEGTPRERRDNEPRWRLASCFSGLLHDVGKPLSDVSITDKDGSITWNPYSES LHDWAYRHGIDRYFIRWRDKRHKRHEQFSLLAWHRIIPAETQEFLSKSGPSIIEAMLEAI SGTSVNQPVTKLMLRADQESVSRDLRQSRLDVNEFSYGVPVERYVFDAIRRLVKTGKWKV NEPGAKVWHLNQGVFIAWKQLGDLYDLISQDKIPGIPRDPDTLADILIERGFAVPNTVQE KGERAYYRYWEVLPEMLQEAAGPVKILMLRLESNDLVFTTEPPAAVTGEVVGDVEDAEIE FVDPEEADEDQAEGDAGLNNDMLAAELEAEKALAGLGFGDAMAMLKSTSDIAEEKPEQED TESTELPKPDASKKGKQQSKPGKARAEKQPQKPEVKEDLSPQDIAKNAPPLANDDPLQAL KDVGGGLGDIDFPFDVFNASAETACTDATNLEIPDITEPEKQEEQPKPDFVPQEQNSLQN GDFPIFSDSDEPPSWAIEPLPMLTDTPEQTIPAPDMQHAGKPKELEKDAKTLLSEMLAGY GEASTLLEQAIMPVLEGKTTLGEVLCLMKGQAVILYPEGARSLGAPSEVLSKLSHANAIV PDPIMPGRKVRDFSGVKAIVLVDQLSDAVVAAIKDAEASMGGYQEAFELVSPPGSGVSKN KSAPKQQSRKKTQQQKPEVDAGAGSEQKTKDKSLQQQPKEKQGNVASLVEEQKRKPVQDQ EKQNVARLPKREAQPVAPKPKVEHERELGHVEVRERDEPEVREFEPPKAKTNPKDINEED FLPSGVTPEKALLMLKDMIQKRSGRWLVTPVLEEDGCLVTSVKAFDMIAGENVGISKHIL YGLLSRAQRRPLLKKRQGKLYLEVDKA

Reference
N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
N/A

N/A

Information of plasmid

ID	1192
Plasmid name	p34998-239.973kb
GenBank accession number	NZ_CP012168.1
Incompatibility group	IncA/C
Genome size	239973 bp
Coordinate of oriT [Strand]	78000..78550 [+]
Drug resistance	_
Heavy-metal resistance	mercury resistance
Virulence factor	_
Xenobiotic degradation	_
Host bacterium [NCBI Taxonomy ID]	Enterobacter hormaechei subsp. steigerwaltii 34998 [299766]

Reference
N/A