oriTDB
The information of the oriT region
oriTDB accession number 100732
Name oriT_p34998-239.973kb  insolico
Sequence Completeness intact
oriT length 551 nt
oriT sequence GAGCAGAGCTATGTGTGACAAGAAGTATAGAGATTATGAGGTAGCCATCATGGTCGATGT GAACCCGTTTGACCGGGTTATGAATGAGTTGAAAAGTCGTGGCCGCAAGAACGCTCATAT CCTGAGCATCCTTCAATTCGACTGGCCCGCATCGGAGGTCATCATCGAGAAGCTGAGCTG TTACATCACAGATGGGATTAAGGCCAATCAGCAGCCTGTGATTTACCCGATCATTGAAGA AGCTCTGCATCGCTACAGCCAGCTCGTGTTTCATGAGCAGAGAGAAAAGTATGAGGACCC GGCCAGAATAGGGGCATTTCTGGAAACCCTGATCACTGAAACTTGCCGGGCGTTGGAAGT GCAAATTGTCGATAGTGGTGGCGATTCATGGTCTGTCGATTCAGGAGAGTCGTTCTCACT TTGGCTTTCTTCCCATCCAGGAGAACTATCCATTAACCCGCAGCCTCATGAGGATGAGAC CTCTTTGCGTGGCTTGCTGTATGAGCTCATCACCTGTGAGAGTGTGAAAACTGTTTTAAG GAGAACCGACT
IR (inverted repeat)[62-69] [72-79] nt  (AACCCGTT..ACCGGGTT)
Location of nic site _
Conserved sequence flanking the
  nic site 		_
Note predicted by the oriTfinder
L: 62-69;R:72-79
Visualization of oriT structure
Reference
 N/A
I. Information of Relaxase
ID 804
Name TraI_p34998-239.973kb insolico
GenBank accession number WP_000909947
Family MOBH
Length 987 aa
UniProt ID _
PDB ID _
Pfam TraI_2 [PF07514.10], Evalue: 1.50E-101, Aligned region: 44..362
Note putative relaxase
Protein sequence [Download] MLKALHKLFGGRSGAIETAPSARVLPLKDVEDEEIPRYPPFAKGLPVAPLDKILATQAEL
IEKVRNSLGFTVDDFNRLVLPVIQRYAAFVHLLPASESHHHRGAGGLFRHGLEVAFWATQ
ASESVIFSIEGTPRERRDNEPRWRLASCFSGLLHDVGKPLSDVSITDKDGSITWNPYSES
LHDWAYRHGIDRYFIRWRDKRHKRHEQFSLLAWHRIIPAETQEFLSKSGPSIIEAMLEAI
SGTSVNQPVTKLMLRADQESVSRDLRQSRLDVNEFSYGVPVERYVFDAIRRLVKTGKWKV
NEPGAKVWHLNQGVFIAWKQLGDLYDLISQDKIPGIPRDPDTLADILIERGFAVPNTVQE
KGERAYYRYWEVLPEMLQEAAGPVKILMLRLESNDLVFTTEPPAAVTGEVVGDVEDAEIE
FVDPEEADEDQAEGDAGLNNDMLAAELEAEKALAGLGFGDAMAMLKSTSDIAEEKPEQED
TESTELPKPDASKKGKQQSKPGKARAEKQPQKPEVKEDLSPQDIAKNAPPLANDDPLQAL
KDVGGGLGDIDFPFDVFNASAETACTDATNLEIPDITEPEKQEEQPKPDFVPQEQNSLQN
GDFPIFSDSDEPPSWAIEPLPMLTDTPEQTIPAPDMQHAGKPKELEKDAKTLLSEMLAGY
GEASTLLEQAIMPVLEGKTTLGEVLCLMKGQAVILYPEGARSLGAPSEVLSKLSHANAIV
PDPIMPGRKVRDFSGVKAIVLVDQLSDAVVAAIKDAEASMGGYQEAFELVSPPGSGVSKN
KSAPKQQSRKKTQQQKPEVDAGAGSEQKTKDKSLQQQPKEKQGNVASLVEEQKRKPVQDQ
EKQNVARLPKREAQPVAPKPKVEHERELGHVEVRERDEPEVREFEPPKAKTNPKDINEED
FLPSGVTPEKALLMLKDMIQKRSGRWLVTPVLEEDGCLVTSVKAFDMIAGENVGISKHIL
YGLLSRAQRRPLLKKRQGKLYLEVDKA
Reference
 N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
 N/A
 N/A
Information of plasmid
ID 1192
Plasmid name p34998-239.973kb
GenBank accession number NZ_CP012168.1
Incompatibility group IncA/C
Genome size 239973 bp
Coordinate of oriT  [Strand] 78000..78550 [+]
Drug resistance _
Heavy-metal resistance insolico mercury resistance
Virulence factor _
Xenobiotic degradation _
Host bacterium [NCBI Taxonomy ID] Enterobacter hormaechei subsp. steigerwaltii 34998 [299766]
Reference
 N/A

Microbial Bioinformatics Group in MML, SJTU