oriTDB
The information of the oriT region
oriTDB accession number 100730
Name oriT_pOLF-00D989_87-1-intermediate  insolico
Sequence Completeness core
oriT length 61 nt
oriT sequence GGGTGTCGGGGCGCAGCCCTGACCCAGTTCACAGAGCGATAGCGATGTGTATACTGGCTT A
IR (inverted repeat)[3-12] [16-25] nt  (GTGTCGGGGC..GCCCTGACCC)
Location of nic site [57-58] nt
Conserved sequence flanking the
  nic site 		CTGG|CTTA
Note predicted by the oriTfinder
L:3-12;R:16-25;D:57-58
Visualization of oriT structure
Reference
 N/A
I. Information of Relaxase
ID 802
Name Nuclease_pOLF-00D989_87-1-intermediate insolico
GenBank accession number WP_000635821
Family MOBP
Length 524 aa
UniProt ID _
PDB ID _
Pfam Relaxase [PF03432.13], Evalue: 1.00E-19, Aligned region: 45..246
Note putative relaxase
Protein sequence [Download] MIVKFHARGKGGGSGPVDYLLGRERNREGATVLRGNPEEVRELIDSTPFSKKYTSGVLSF
AEKELPPGERERVMTSFERVLMPGLEKDQYSILWVEHQDKGRLELNFVIPNMELQSGKRL
QPYYDRADRPRINAWQTLVNHHYGLRDPNAPENRRTLVTPNNLPKAKQEAAEAITRGLEA
LYHAGAIKTRQDVTEALTAAGFEVVRTTKSSISIADPEGGRNLRLKGALYEQSFTNGNRL
REETERASRFYREHAEQRVQEARRVCRQGIELKQAENQRRYQRTYNIREKATGYAEHHRE
HAVQHHRGRTVPAAEKTALAGDQRADTVSGADRAQRHGRHFPGVLGADGVAGKQDCEKYP
DYQRAGKHAGETRGKNLGGDVRQWREREISGVAGRGERGKHLDGGRQERREAGQGVNEYD
GTGRAFAERLRAFATGLYAAAERVGERLRGIAEDARGYATEQRDTERARRDIESAGAEIS
RASGSLESVIYREQQLRDEQERARYRHEVQERAARVRSGPSMEM
Reference
 N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
 N/A
 N/A
Information of plasmid
ID 1190
Plasmid name pOLF-00D989_87-1-intermediate
GenBank accession number NZ_CP011944.1
Genome size 3372 bp
Coordinate of oriT  [Strand] 39..99 [-]
Drug resistance _
Heavy-metal resistance _
Virulence factor _
Xenobiotic degradation _
Host bacterium [NCBI Taxonomy ID] Salmonella enterica subsp. enterica serovar Enteritidis strain OLF-00D989 87-1 [149539]
Reference
 N/A

Microbial Bioinformatics Group in MML, SJTU