oriTDB

The information of the oriT region

oriTDB accession number	100722
Name	oriT_pCAV1335-5410
Sequence Completeness	intact
oriT length	175 nt
oriT sequence	GGTTTCGGGGCGCAGCCCTGAACCAGTCACGTAGCGCTAGCGGAGTGTATACTGGCTTAC TATGTTGGCACGGATGAGGGTGTCAGTGAAGTGCTTCATGTGGCAGGAGAAAAAAGGCGG CACCGGTGCGTCAGCAGAATATGTGATACAGGATATATTCCGCTTCCTCGCTCAC
IR (inverted repeat)	[2-11] [15-24] nt (GTTTCGGGGC..GCCCTGAACC)
Location of nic site	[55-56] nt
Conserved sequence flanking the nic site	CTGG\|CTTA
Note	predicted by the oriTfinder
	L:2-11;R:15-24;D:55-56

Visualization of oriT structure

1...5....10....15....20....25....30....35....40....45....50....55....60

1

GGTTTCGGGGCGCAGCCCTGAACCAGTCACGTAGCGCTAGCGGAGTGTATACTGGCTTAC

61

TATGTTGGCACGGATGAGGGTGTCAGTGAAGTGCTTCATGTGGCAGGAGAAAAAAGGCGG

121

CACCGGTGCGTCAGCAGAATATGTGATACAGGATATATTCCGCTTCCTCGCTCAC

Reference
N/A

I. Information of Relaxase

ID	794
Name	Putative relaxase of pCAV1335-5410
GenBank accession number	WP_047719615
Family	MOB_P
Length	498 aa
UniProt ID	_
PDB ID	_
Pfam	Relaxase [PF03432.13], Evalue: 1.20E-15, Aligned region: 49..246
Note	putative relaxase
Protein sequence [Download]	MIVKFHPRGRGGGAGPVDYLLGKDRQREGATVLQGKPEEVRELIDASPYVKKYTSGVLSF AEADLPPGQREKLMASFERVLMPGLDKDQYSILWVEHADKGRLELNFLIPNTELLTGRRL QPYYDRADRPRIDAWQTIVNGRLGLHDPNAPENRRALVTPSGLPKTKQEAAEAITRGLLT LASSGELKSRQDVTDTLEGAGFEVVRTTKSSISIADPDGGRNIRLKGAIYEQSFNAGEGL RAAIESAAAEYRRDAESRIQRARAVCQSGTERKREENQRRHPRPRAEYERGDGEKPAERT ADCRADMAHHPDGVSAADRHEREHSVVAGAADNRQLHASSSAGRYPGENDRPDVGSALSG EQRRPEVSYPAAGDTNRSHPLRRDDMDPPETGVAENDRAGKAVAERIRAATAGLLAKAGR MGERLRGMAEHVWAYATGERGAERARVGLEHAGAEFKRAAAPLVRELNAIELRQRENEYQ KTLELERQPQKTYRGPTL

Reference
N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
N/A

N/A

Information of plasmid

ID	1182
Plasmid name	pCAV1335-5410
GenBank accession number	NZ_CP011613.1
Genome size	5410 bp
Coordinate of oriT [Strand]	3018..3192 [-]
Drug resistance	_
Heavy-metal resistance	_
Virulence factor	_
Xenobiotic degradation	_
Host bacterium [NCBI Taxonomy ID]	Klebsiella oxytoca CAV1335 [571]

Reference
N/A