oriTDB
The information of the oriT region
oriTDB accession number 100720
Name oriT_pCAV1321-3820  insolico
Sequence Completeness intact
oriT length 174 nt
oriT sequence GGTTTCGGGGCGCAGCCCTGAACCAGTCACGTAGCGCTAGCGGAGTGTATACTGGCTTAC TATGTTGGCACGGATGCGAGTGTCAGTGAAGTGCTTCATGTGGCAGGAGAAAAATGCAGC AGCGGAGCGTCAGCAGAATATGTGATACAGGATATATTCCGCTTCCTCGCTCAC
IR (inverted repeat)[2-11] [15-24] nt  (GTTTCGGGGC..GCCCTGAACC)
Location of nic site [55-56] nt
Conserved sequence flanking the
  nic site 		CTGG|CTTA
Note predicted by the oriTfinder
L:2-11;R:15-24;D:55-56
Visualization of oriT structure
Reference
 N/A
I. Information of Relaxase
ID 792
Name Putative relaxase of pCAV1321-3820 insolico
GenBank accession number WP_023063529
Family MOBP
Length 501 aa
UniProt ID _
PDB ID _
Pfam Relaxase [PF03432.13], Evalue: 1.50E-17, Aligned region: 41..273
Note putative relaxase
Protein sequence [Download] MIVKFHPRGRGGGAGPVDYLLGKDRQRDGASILQGKPEEVRELIDASPYAKKYTSGVLSF
AEQDLPPGQREKLMASFERVLMPGLDKDQYSVLWVEHQDKGRLELNFLIPNTELLTGKRL
QPYYDRADRPRIDAWQTIVNGRLGLHDPNAPENRRALVTPSALPETKQEAAQAITRGLLS
LASSGELKTRQDVTKALESAGFEVVRTTKSSISIADPDGGRNIRLKGAIYEQSFNAGEGL
RAEIESAAADYRRDAESRIQRAREVCQSGTERKREENQRRHPRPRPEAVLSHEPAHERDA
AHGQPDVADHRPGVHAADSLERGHSVVAGATDTRQLHEYPGAERRAGEAERQDVGREVPG
RQPGAFSGAAGGRESGHELDVRQRQEEGHQTGTGVEQHDGAGKTVIERIRAATTGLLEKA
GRVGECLRGMADDVWTYATGERGAERARHGLEQAGAEFERAAAPVVEQLNTIEHRQQHER
SQVQKILELEKAPRARYGPTL
Reference
 N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
 N/A
 N/A
Information of plasmid
ID 1180
Plasmid name pCAV1321-3820
GenBank accession number NZ_CP011605.1
Genome size 3820 bp
Coordinate of oriT  [Strand] 937..1110 [-]
Drug resistance _
Heavy-metal resistance _
Virulence factor insolico virulence factor
Xenobiotic degradation _
Host bacterium [NCBI Taxonomy ID] Citrobacter freundii CAV1321 [546]
Reference
 N/A

Microbial Bioinformatics Group in MML, SJTU