oriTDB
The information of the oriT region
oriTDB accession number 100715
Name oriT_pCAV1099-5410  insolico
Sequence Completeness intact
oriT length 175 nt
oriT sequence GGTTTCGGGGCGCAGCCCTGAACCAGTCACGTAGCGCTAGCGGAGTGTATACTGGCTTAC TATGTTGGCACGGATGAGGGTGTCAGTGAAGTGCTTCATGTGGCAGGAGAAAAAAGGCGG CACCGGTGCGTCAGCAGAATATGTGATACAGGATATATTCCGCTTCCTCGCTCAC
IR (inverted repeat)[2-11] [15-24] nt  (GTTTCGGGGC..GCCCTGAACC)
Location of nic site [55-56] nt
Conserved sequence flanking the
  nic site 		CTGG|CTTA
Note predicted by the oriTfinder
L:2-11;R:15-24;D:55-56
Visualization of oriT structure
Reference
 N/A
I. Information of Relaxase
ID 787
Name Putative relaxase of pCAV1099-5410 insolico
GenBank accession number WP_047719615
Family MOBP
Length 498 aa
UniProt ID _
PDB ID _
Pfam Relaxase [PF03432.13], Evalue: 1.20E-15, Aligned region: 49..246
Note putative relaxase
Protein sequence [Download] MIVKFHPRGRGGGAGPVDYLLGKDRQREGATVLQGKPEEVRELIDASPYVKKYTSGVLSF
AEADLPPGQREKLMASFERVLMPGLDKDQYSILWVEHADKGRLELNFLIPNTELLTGRRL
QPYYDRADRPRIDAWQTIVNGRLGLHDPNAPENRRALVTPSGLPKTKQEAAEAITRGLLT
LASSGELKSRQDVTDTLEGAGFEVVRTTKSSISIADPDGGRNIRLKGAIYEQSFNAGEGL
RAAIESAAAEYRRDAESRIQRARAVCQSGTERKREENQRRHPRPRAEYERGDGEKPAERT
ADCRADMAHHPDGVSAADRHEREHSVVAGAADNRQLHASSSAGRYPGENDRPDVGSALSG
EQRRPEVSYPAAGDTNRSHPLRRDDMDPPETGVAENDRAGKAVAERIRAATAGLLAKAGR
MGERLRGMAEHVWAYATGERGAERARVGLEHAGAEFKRAAAPLVRELNAIELRQRENEYQ
KTLELERQPQKTYRGPTL
Reference
 N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
 N/A
 N/A
Information of plasmid
ID 1175
Plasmid name pCAV1099-5410
GenBank accession number NZ_CP011592.1
Genome size 5410 bp
Coordinate of oriT  [Strand] 4400..4574 [-]
Drug resistance _
Heavy-metal resistance _
Virulence factor _
Xenobiotic degradation _
Host bacterium [NCBI Taxonomy ID] Klebsiella oxytoca CAV1099 [571]
Reference
 N/A

Microbial Bioinformatics Group in MML, SJTU