 oriTDB accession number | 100714 |
| Name | oriT_pKPC_CAV1043  |
Sequence Completeness  | intact |
| oriT length | 627 nt |
| oriT sequence | AGCGCCGCAGATAATCTGACCGATTACCTCCTGAAACCAGGTCTATATAGGCCAAAAGTT CATCTGATACTTTTGCGGTTATTATTGGCATTCAGTCCTCACATTGTGCATTTTTTAAAC AAAAAATTGGGATCTAACAAGCTGAAATCTTAGTATTACCAAAGTAATAAAGCAAACTCA TTATAAAACAATGAGTTATTGGGTGTTTTTAATACCTAATTATTACCGAATATTGTTGCT ATTTATTTTTTTATCTTTTAAATCAGTATGATAGCGTGATTTATCGCGCTGCGTTAGGTG TATAGCAGGTTAAGGGATAAAAAATCATCTTTTTTGGTAGGGGCGATCTACGTAGGTTAA GGACTAACTGGCTAAAAAGCGTTCAATATTCCGTATTCATGCTTGCATGAATACCAGTAC AACAAAAGTACATCAAAATTACATCAAAATTACATCACTTGAAGGTTGACAGTACAACAA AATTACATCATTCTTTGGTCATGAGGTAGCCAGTACAACAAAAGTACATCAAAAGTACAT CAAAATTACATCAAAATTACATCATTCTAAATGAGGGTACTATGAAGCCCAAAAGTATCA GGGCGGCACTTCAGTTGATGTTGCCGG |
| IR (inverted repeat) | IR1: [198-207] [211-220] nt (ATTGGGTGTT..AATACCTAAT) IR2:[319-324] [330-335] nt (AAAAAA..TTTTTT) IR3: [393-402] [405-414] nt (GTATTCATGC..GCATGAATAC) |
| Location of nic site | [301-302] nt |
| Conserved sequence flanking the nic site | GGTGT|ATAGC |
| Note | predicted by the oriTfinder |
Visualization of oriT structure Reference| ID | 786 |
| Name | MobC_pKPC_CAV1043 |
| GenBank accession number | WP_001144737 |
| Family | Other |
| Length | 88 aa |
| UniProt ID | _ |
| PDB ID | _ |
| Pfam | MobC [PF05713.10], Evalue: 5.70E-09, Aligned region: 16..68 |
| Note | putative relaxase |
| Protein sequence [Download] | MPVLTDEEVNTVRESCRQLGAIGRNLNQVARALNIEFRESDKLKQEAIEKLAERIDQHLD HVSELFDKTWSRWHDCHFQKTTAPVDWA |
Reference| ID | 1174 |
| Plasmid name | pKPC_CAV1043 |
| GenBank accession number | NZ_CP011589.1 |
| Incompatibility group | IncN |
| Genome size | 59138 bp |
| Coordinate of oriT [Strand] | 45730..46356 [+] |
| Drug resistance | _ |
| Heavy-metal resistance | _ |
| Virulence factor | _ |
| Xenobiotic degradation | _ |
| Host bacterium [NCBI Taxonomy ID] | Enterobacter asburiae CAV1043 [61645] |
Reference