oriTDB

oriT
Relaxosome
T4CP
Plasmid&Host

The information of the oriT region

oriTDB accession number	100711
Name	oriT_pYU39_4.8
Sequence Completeness	intact
oriT length	83 nt
oriT sequence	GGGTGTCGGGGCGCAGCCCTGACCCAGTCACGTAGCGATAGCGGAGTGTATACTGGCTTA ACTATGTGGCATCAGTGCGGATT
IR (inverted repeat)	[3-12] [16-25] nt (GTGTCGGGGC..GCCCTGACCC)
Location of nic site	[56-57] nt
Conserved sequence flanking the nic site	CTGG\|CTTA
Note	predicted by the oriTfinder
	L:3-12;R:16-25;D:56-57

Visualization of oriT structure

Reference
N/A

I. Information of Relaxase

ID	783
Name	Nuclease_pYU39_4.8
GenBank accession number	WP_000635819
Family	MOB_P
Length	529 aa
UniProt ID	D5I152
PDB ID	_
Pfam	Relaxase [PF03432.13], Evalue: 3.10E-19, Aligned region: 49..246
Note	putative relaxase
Protein sequence [Download]	MIVKFHARGKGGGSGPVDYLLGRERNREGATVLRGNPEEIRELIDATPFSKKYTSGVLSF AEKELPPGERERVMTSFERVLMPGLEKDQYSILWVEHQDKGRLELNFVIPNMELQSGKRL QPYYDRADRPRINAWQTLVNHHYGLRDPNAPENRRTLVTPNNLPKAKQEAAEAITRGLEA LYRAGAIKTRQDVTEALTAAGFEVVRTTRSSISIADPEGGRNLRLKGALYEQSFTNGNGL REETERASRFYREHAEQRVQEARRVCRQGTELKQAENQRRYQRTYNIRETATGYAEHHRE HAAQHHRGRTVPAAEKPALAGDQRAGTVSGADRAQRHGRHFPGVLGADSVAGKQDCEKYL DHQRAGKHAGETRGKNLGGDVRQWREREISGAAGRGERGKHLDGGRQERREAGQGVNEYD GTGRAFAERLRAFATGLYAAAERVGERLRRIAEDARGYATEQRDTERACRELESAGAAIS RTSRPLESVIYHEQQIRDEQERQAQELARRWHEEQEPEARIWRGPSMGM

Reference
N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
N/A

N/A

Information of plasmid

ID	1171
Plasmid name	pYU39_4.8
GenBank accession number	NZ_CP011433.1
Incompatibility group	ColRNAI
Genome size	4800 bp
Coordinate of oriT [Strand]	2412..2494 [+]
Drug resistance	_
Heavy-metal resistance	_
Virulence factor	_
Xenobiotic degradation	_
Host bacterium [NCBI Taxonomy ID]	Salmonella enterica subsp. enterica YU39 [59201]

Reference

[1] Calva E et al (2015) Complete Genome Sequencing of a Multidrug-Resistant and Human-Invasive Salmonella enterica Serovar Typhimurium Strain of the Emerging Sequence Type 213 Genotype. Genome Announc. 3(3). [PMID:26089426]