 oriTDB accession number | 100708 |
| Name | oriT_pAt  |
Sequence Completeness  | core |
| oriT length | 37 nt |
| oriT sequence | CCAAGGGCGCAATTATACGTCGTGATACGACGCGTTG |
| IR (inverted repeat) | [18-23] [27-32] nt (CGTCGT..ACGACG) |
| Location of nic site | [7-8] nt |
| Conserved sequence flanking the nic site | _ |
| Note | predicted by the oriTfinder |
Visualization of oriT structure Reference| ID | 780 |
| Name | TraA_pAt |
| GenBank accession number | WP_046205660 |
| Family | MOBQ |
| Length | 1100 aa |
| UniProt ID | _ |
| PDB ID | _ |
| Pfam | MobA_MobL [PF03389.14], Evalue: 1.30E-73, Aligned region: 17..243 AAA_30 [PF13604.5], Evalue: 5.10E-56, Aligned region: 381..569 Viral_helicase1 [PF01443.17], Evalue: 8.50E-05, Aligned region: 657..737 AAA_19 [PF13245.5], Evalue: 3.40E-09, Aligned region: 386..513 UvrD_C_2 [PF13538.5], Evalue: 1.90E-06, Aligned region: 692..736 |
| Note | putative relaxase |
| Protein sequence [Download] | MAIAHFSASIVSRGSGRSVVLSAAYRHCAKMEFEREARTIDYTRKQGLLHEEFVLPANAP EWARSLIADRSVSGAVEAFWNKVETFEKRADAQLARDLTIALPLELSAEQNIALVRDFVE NHILAKGMVADWVYHENPGNPHIHLMTTLRPLSDESFGSKKVAVIGEDGQPVRTKSGKIL YELWAGSTDDFNVLRDGWFERLNHHLALGGIDLKIDGRSYEKQGINLEPTIHLGVGAKAI ERKAEQRGVRPELERVELNEQRRSENTRRILNNPAIVLDLITREKSVFDERDVAKVLHRY IDDPALFQQLMIKIILNRQVLRLQRETIDFSTGEKLPARYSTRAMIRLEATMARQATWLS NREGRGVSPTALDATFRRHERLSDEQKAAIEHVAGPARIAAVVGRAGAGKTTMMKAAREA WELAGYHVVGGALAGKAAEGLEKEAGIQSRTLASWELRWKRGRDLLDDKTIFIMDEAGMV ASKQMAGFVDTAVRAGAKIVLVGDPEQLQPIEAGAAFRAIADRIGYAELETIYRQREEWM RKASLDLARGNVENALSAYRANVRITGERLKAEAVERLIADWNHDYDQTKTILILAHLRR DVRMLNVMAREKLVERGMVGEGHLFRTADGERRFDAGDQIVFLKNERSLGVKNGMIGHVV EAAANRIVATVGEGDRRRQVIVEQRFYNNLDHGYATTIHKSQGATVDRVKVLASLSLDRH LTYVAMTRHREDLQLYYGTRSFSFNGGLAKVLSRRQAKETTLDYEHGQFYREALRFAETR GLHVVQVARTMVRDRLDWTLRQKAKLVDLSRRLAAFAAHLGITQSPKTQTMKETAPMVAG IKTFSGSVSDIVGDRLGTDPSLKRQWEEVSARFAYVFADPETAFRAMNFDALLADKEVAK QILQKLEAEPGSIGPLKGKTGILASKPEREARRVAEVNVPALKRDLEQYLRMRETVTQRL QTDEQSLRQRVSIDIPALSPAARVVLERVRDAIDRNDLPAAMAYAISNRETKLEIDGFNR AVTERFGERTLLSNSAREPSGKLYEKLSESMKPEQKGQLKQAWSVMRTAQQLAAHERTVQ SLRQAEEQRLTQRQTPVLKQ |
Reference| ID | 1168 |
| Plasmid name | pAt |
| GenBank accession number | NZ_CP011248.1 |
| Genome size | 544752 bp |
| Coordinate of oriT [Strand] | 291923..291959 [-] |
| Drug resistance | _ |
| Heavy-metal resistance | _ |
| Virulence factor | _ |
| Xenobiotic degradation | _ |
| Host bacterium [NCBI Taxonomy ID] | Agrobacterium tumefaciens Ach5 [358] |
Reference| [1] Huang YY et al (2015) Complete Genome Sequence of Agrobacterium tumefaciens Ach5. Genome Announc. 3(3). [PMID:26044425] |