oriTDB

The information of the oriT region

oriTDB accession number	100708
Name	oriT_pAt
Sequence Completeness	core
oriT length	37 nt
oriT sequence	CCAAGGGCGCAATTATACGTCGTGATACGACGCGTTG
IR (inverted repeat)	[18-23] [27-32] nt (CGTCGT..ACGACG)
Location of nic site	[7-8] nt
Conserved sequence flanking the nic site	_
Note	predicted by the oriTfinder
	L:18-23;R:27-32;D:7-8

Visualization of oriT structure

1...5....10....15....20....25....30....35....40....45....50....55....60

1

CCAAGGGCGCAATTATACGTCGTGATACGACGCGTTG

Reference
N/A

I. Information of Relaxase

ID	780
Name	TraA_pAt
GenBank accession number	WP_046205660
Family	MOB_Q
Length	1100 aa
UniProt ID	_
PDB ID	_
Pfam	MobA_MobL [PF03389.14], Evalue: 1.30E-73, Aligned region: 17..243 AAA_30 [PF13604.5], Evalue: 5.10E-56, Aligned region: 381..569 Viral_helicase1 [PF01443.17], Evalue: 8.50E-05, Aligned region: 657..737 AAA_19 [PF13245.5], Evalue: 3.40E-09, Aligned region: 386..513 UvrD_C_2 [PF13538.5], Evalue: 1.90E-06, Aligned region: 692..736
Note	putative relaxase
Protein sequence [Download]	MAIAHFSASIVSRGSGRSVVLSAAYRHCAKMEFEREARTIDYTRKQGLLHEEFVLPANAP EWARSLIADRSVSGAVEAFWNKVETFEKRADAQLARDLTIALPLELSAEQNIALVRDFVE NHILAKGMVADWVYHENPGNPHIHLMTTLRPLSDESFGSKKVAVIGEDGQPVRTKSGKIL YELWAGSTDDFNVLRDGWFERLNHHLALGGIDLKIDGRSYEKQGINLEPTIHLGVGAKAI ERKAEQRGVRPELERVELNEQRRSENTRRILNNPAIVLDLITREKSVFDERDVAKVLHRY IDDPALFQQLMIKIILNRQVLRLQRETIDFSTGEKLPARYSTRAMIRLEATMARQATWLS NREGRGVSPTALDATFRRHERLSDEQKAAIEHVAGPARIAAVVGRAGAGKTTMMKAAREA WELAGYHVVGGALAGKAAEGLEKEAGIQSRTLASWELRWKRGRDLLDDKTIFIMDEAGMV ASKQMAGFVDTAVRAGAKIVLVGDPEQLQPIEAGAAFRAIADRIGYAELETIYRQREEWM RKASLDLARGNVENALSAYRANVRITGERLKAEAVERLIADWNHDYDQTKTILILAHLRR DVRMLNVMAREKLVERGMVGEGHLFRTADGERRFDAGDQIVFLKNERSLGVKNGMIGHVV EAAANRIVATVGEGDRRRQVIVEQRFYNNLDHGYATTIHKSQGATVDRVKVLASLSLDRH LTYVAMTRHREDLQLYYGTRSFSFNGGLAKVLSRRQAKETTLDYEHGQFYREALRFAETR GLHVVQVARTMVRDRLDWTLRQKAKLVDLSRRLAAFAAHLGITQSPKTQTMKETAPMVAG IKTFSGSVSDIVGDRLGTDPSLKRQWEEVSARFAYVFADPETAFRAMNFDALLADKEVAK QILQKLEAEPGSIGPLKGKTGILASKPEREARRVAEVNVPALKRDLEQYLRMRETVTQRL QTDEQSLRQRVSIDIPALSPAARVVLERVRDAIDRNDLPAAMAYAISNRETKLEIDGFNR AVTERFGERTLLSNSAREPSGKLYEKLSESMKPEQKGQLKQAWSVMRTAQQLAAHERTVQ SLRQAEEQRLTQRQTPVLKQ

Reference
N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
N/A

N/A

Information of plasmid

ID	1168
Plasmid name	pAt
GenBank accession number	NZ_CP011248.1
Genome size	544752 bp
Coordinate of oriT [Strand]	291923..291959 [-]
Drug resistance	_
Heavy-metal resistance	_
Virulence factor	_
Xenobiotic degradation	_
Host bacterium [NCBI Taxonomy ID]	Agrobacterium tumefaciens Ach5 [358]

Reference

[1] Huang YY et al (2015) Complete Genome Sequence of Agrobacterium tumefaciens Ach5. Genome Announc. 3(3). [PMID:26044425]