oriTDB

The information of the oriT region

oriTDB accession number	100705
Name	oriT_pSJ_3
Sequence Completeness	core
oriT length	60 nt
oriT sequence	GGGTGTCGGGGCGCAGCCCTGACCCAGTTCACAGAGCGATAGCGATGTGTATACTGGCTT
IR (inverted repeat)	[3-12] [16-25] nt (GTGTCGGGGC..GCCCTGACCC)
Location of nic site	[57-58] nt
Conserved sequence flanking the nic site	CTGG\|CTTA
Note	predicted by the oriTfinder
	L:3-12;R:16-25;D:57-58

Visualization of oriT structure

1...5....10....15....20....25....30....35....40....45....50....55....60

1

GGGTGTCGGGGCGCAGCCCTGACCCAGTTCACAGAGCGATAGCGATGTGTATACTGGCTT

Reference
N/A

I. Information of Relaxase

ID	777
Name	Putative relaxase of pSJ_3
GenBank accession number	WP_029391997
Family	MOB_P
Length	524 aa
UniProt ID	_
PDB ID	_
Pfam	Relaxase [PF03432.13], Evalue: 1.00E-19, Aligned region: 46..246
Note	putative relaxase
Protein sequence [Download]	MIVKFHARGKGGGSGPVDYLLGRERNREGATVLRGNPEEVRELIDSTPFSKKYTSGVLSF AEKELPPGERERVMTSFERVLMPGLEKDQYSILWVEHQDKGRLELNFVIPNMELQSGKRL QPYYDRADRPRINAWQTLVNHHYGLRDPNAPENRRTLVTPNNLPKAKQEAAEAITRGLEA LYHAGAIKTRQDVTEALTAAGFEVVRTTKSSISIADPEGGRNLRLKGALYEQSFTNGNRL REETERASRFYREHAEQRVQEARRVCRQGIELKQAENQRRYQRTYNIREKATGYAEHHRE HAVQHHRGRTVPAAEKTALAGDQRADTVSGADRAQRHGRDFPGVLGADGVAGKQDCEKYP DYQRAGKHAGETRGKNLGGDVRQWREREISGVAGRGERGKHLDGGRQERREAGQGVNEYD GTGRAFAERLRAFATGLYAAAERVGERLRGIAEDARGYATEQRDTERARRDIESAGAEIS RASGSLESVIYREQQLRDEQERARYRHEVQERAARVRSGPSMEM

Reference
N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
N/A

N/A

Information of plasmid

ID	1165
Plasmid name	pSJ_3
GenBank accession number	NZ_CP011066.1
Genome size	3373 bp
Coordinate of oriT [Strand]	39..98 [-]
Drug resistance	_
Heavy-metal resistance	_
Virulence factor	_
Xenobiotic degradation	_
Host bacterium [NCBI Taxonomy ID]	Escherichia coli Sanji [1441627]

Reference
N/A