oriTDB
The information of the oriT region
oriTDB accession number 100704
Name oriT_CSK29544_2p  insolico
Sequence Completeness intact
oriT length 174 nt
oriT sequence GGTTTCGGGGCGCAGCCCTGAACCAGTCACGTAGCGCTAGCGGAGTGTATACTGGCTTAC TATGTTGGCACGGATGCGAATATCAGTGAAGTGCTTCATGTGGCAGGAGAAAAATGCAGC AGCGGAGCGTCAGCAGAATATGCGATACAGGATATATTCCGCTTCCTCGCTCAC
IR (inverted repeat)[2-11] [15-24] nt  (GTTTCGGGGC..GCCCTGAACC)
Location of nic site [55-56] nt
Conserved sequence flanking the
  nic site 		CTGG|CTTA
Note predicted by the oriTfinder
L:2-11;R:15-24;D:55-56
Visualization of oriT structure
Reference
 N/A
I. Information of Relaxase
ID 776
Name Nuclease_CSK29544_2p insolico
GenBank accession number WP_007899683
Family MOBP
Length 501 aa
UniProt ID _
PDB ID _
Pfam Relaxase [PF03432.13], Evalue: 2.20E-16, Aligned region: 49..246
Note putative relaxase
Protein sequence [Download] MIVKFHPRGRGGGAGPVDYLLGKDRQREGASVLQGKPEEVRELIDASPYVKKYTSGVLSF
AEADLPPGQREKLMASFERVLMPGLDKDQYSILWVEHEDKGRLELNFLIPNTELLTGRRL
QPYYDRADRPRIDAWQTIVNGRLGLHDPNAPENRRALVTPAGLPKTKQEAAEAITRGLLS
LASSGELKSRQDVTEALEGAGFEVVRTTKSSISIADPDGGRNIRLKGAIYEQSFNAGEGL
RAAIESAAEEYRRDAESRIQRARAVCQSGTERKREENQRRHQRPRAEYERGDGEKPAERV
ADGREDMAHHPDGVSAADRHEREHSVVAGTADNRQLHTSSSAGRYPGENDRPDVGSTLSG
EQRRPEVPYPAAGDASRSHPLRRDDLDPPETGVAENDRAGKAVAERIRAATAGLLAKAGR
MGERLRGMAEHVWTYATGERGAERARVGLEHAGAEFKRAAAPLVRELNAIEEKAALEYQR
QNELELTLRQKQKSFDGPKMR
Reference
 N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
 N/A
 N/A
Information of plasmid
ID 1164
Plasmid name CSK29544_2p
GenBank accession number NZ_CP011049.1
Genome size 4938 bp
Coordinate of oriT  [Strand] 2481..2654 [-]
Drug resistance _
Heavy-metal resistance _
Virulence factor _
Xenobiotic degradation _
Host bacterium [NCBI Taxonomy ID] Cronobacter sakazakii ATCC 29544 [28141]
Reference
 N/A

Microbial Bioinformatics Group in MML, SJTU