oriTDB
The information of the oriT region
oriTDB accession number 100702
Name oriT_p6411-66.409kb  insolico
Sequence Completeness intact
oriT length 389 nt
oriT sequence TCAAGCTGAAGCGACTGAAGAACCTGAAGTTAAAAAACTGATGGATCAATCAAACCAGAA AGAGCAGCCAGAAGCTAAAGAAGCAGATCCAGACAAAATCAAAAAACCGCTTTTAGTTGT TATTCATGACGGCCGACAAGCGAACCTGATGCTTAATAAAAAGCCTTCTTCTTTGGGTTT TGCATGGATCAAATACGAAGATGGAACAGAGGTATCTGTAGATTGCAGCAGCCTTGAAAT CGAGTATTTACAAGAAGCCTAAACCTACCAATGGAAAAAGACCTTGCTTATGCAAGGTTT TTTTTGGCGGGTTATCCCGACCACCTAGCTTGATTACCCTTAGTCATGACTAAGGAGAAA AGAGGGAAAAATGAAGGGATATAATCTAG
IR (inverted repeat)[275-287] [292-304] nt  (AAAAAGACCTTGC..GCAAGGTTTTTTT)
Location of nic site _
Conserved sequence flanking the
  nic site 		_
Note predicted by the oriTfinder
L: 275-287;R:292-304
Visualization of oriT structure
Reference
 N/A
I. Information of Relaxase
ID 774
Name MobC_p6411-66.409kb insolico
GenBank accession number WP_015060290
Family Other
Length 222 aa
UniProt ID A0A0D5LXG0
PDB ID _
Pfam MobC [PF05713.10], Evalue: 2.10E-05, Aligned region: 167..210
Note putative relaxase
Protein sequence [Download] MTKSNLDQVLKFRVSNAVYDWWQAKCEKQGIKKGEPFQKALENAYKKENDPNYSGQDFSL
NLEKDLTEKIYQLAKFEEVDPDDLIKKMIKEKLSEIEKTQDVIDVFEKTSRKELRLKPSL
MKAINEKAAQIGMKPNQYIISVLTANVTKDSIFFSQEEALKLGESNSQLLAIGRNLNQMA
KNMNQGIYESYDREFVERVHQLVKAQVRHVFTLLERNKKRWE
Reference
 N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
 N/A
 N/A
Information of plasmid
ID 1162
Plasmid name p6411-66.409kb
GenBank accession number NZ_CP010903.1
Genome size 66409 bp
Coordinate of oriT  [Strand] 49102..49490 [+]
Drug resistance _
Heavy-metal resistance _
Virulence factor _
Xenobiotic degradation _
Host bacterium [NCBI Taxonomy ID] Acinetobacter nosocomialis 6411 [106654]
Reference
 N/A

Microbial Bioinformatics Group in MML, SJTU