oriTDB
The information of the oriT region
oriTDB accession number 100700
Name oriT_pBR3  insolico
Sequence Completeness core
oriT length 35 nt
oriT sequence TGAATGTTACCACCGGTAACATGTAAGTGCGCCCT
IR (inverted repeat)[4-11] [15-22] nt  (ATGTTACC..GGTAACAT)
Location of nic site [31-32] nt
Conserved sequence flanking the
  nic site 		TAAGTGCG|CCCT
Note predicted by the oriTfinder
L:4-11;R:15-22;D:31-32
Visualization of oriT structure
Reference
 N/A
I. Information of Relaxase
ID 772
Name MobA_pBR3 insolico
GenBank accession number WP_080790630
Family MOBQ
Length 400 aa
UniProt ID _
PDB ID _
Pfam MobA_MobL [PF03389.14], Evalue: 2.20E-61, Aligned region: 17..254
Note putative relaxase
Protein sequence [Download] MAIYSLHVSNVSRAAGSSAVASCSYITSRRMRDERTGEAFNGFGRRERVEHVCTMLPEGA
PGEYLDPERLFNAVEMAEKRSDARPAKKIMVALPREFDARERFRALEDFISWNITANGYA
CTYAIHTDKDGRNPHAHILVANRRIDPKTGRWAAKSRSEFALDANGRRIPVIDPDTGRQK
IGARNRKVWKRVNVSNNPLDSKEFLERLRREWADSCNALLPGYAVIDHRSFKARGIERIP
TIHEGYASREMEKRGGRGDLCEENRRIQALNRLLDALRAMIGRLSDQAQGILTAVKRRQR
PSGAPQAPSSPEPAEKPQERPQARETPPQAPQEPPKPIRTKKALTDRFKTRLDERLAENE
RKQAEKQAEPDMEETWDLSDPADPLNIGMGWGTGGHGLGL
Reference
 N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
 N/A
 N/A
Information of plasmid
ID 1160
Plasmid name pBR3
GenBank accession number NZ_CP010414.1
Genome size 4891 bp
Coordinate of oriT  [Strand] 1384..1418 [+]
Drug resistance _
Heavy-metal resistance _
Virulence factor _
Xenobiotic degradation _
Host bacterium [NCBI Taxonomy ID] Bifidobacterium breve BR3 [1685]
Reference
 N/A

Microbial Bioinformatics Group in MML, SJTU