oriTDB
The information of the oriT region
oriTDB accession number 100699
Name oriT_p6200-47.274kb  insolico
Sequence Completeness incomplete
oriT length 38 nt
oriT sequence AGGGATTCATAAGGGAATTATTCCCTTATGTGGGGCTT
IR (inverted repeat)[8-17] [21-30] nt  (CATAAGGGAA..TTCCCTTATG)
Location of nic site _
Conserved sequence flanking the
  nic site 		_
Note predicted by the oriTfinder
L:8-17;R:21-30
Visualization of oriT structure
Reference
 N/A
I. Information of Relaxase
ID 771
Name TraA_p6200-47.274kb insolico
GenBank accession number WP_017480453
Family MOBQ
Length 970 aa
UniProt ID _
PDB ID _
Pfam AAA_30 [PF13604.5], Evalue: 3.50E-45, Aligned region: 345..541
MobA_MobL [PF03389.14], Evalue: 1.60E-26, Aligned region: 22..211
AAA_19 [PF13245.5], Evalue: 1.60E-10, Aligned region: 350..477
Viral_helicase1 [PF01443.17], Evalue: 1.50E-05, Aligned region: 591..710
Note putative relaxase
Protein sequence [Download] MAIYHLSVKTGRQYGSTGTRGANHYAYINRDGKYKRDDLENIKSGNLPSWATDAKHFWKS
ADKNERINGRVYTELEISLPRELNKEQREELVEKFVEKTLGENFTYSYAIHSPLASDGQQ
NPHVHLMFSERKLDGIERDEVKHFKRYNPVNPEKGGAGKDRYFSSKMFVVDTRLEWANHV
NDFCENLGIDARIDHRSFKEQGIELSSQNFRADYVSSHKYHINENIKQVRHQNGEIIIER
PSEAIKALTSNQSVFSVRELERFLMAHTDGEEQYLKAYESVITCPDMATLYGKDKVVFSS
KELVGIEESISTFIYNANEESRIQKPFNLVEKLPLNAVRVAETRTFNSEQEKAFYTLTST
DRITLLNGSAGTGKSYVLSAVSEAYKESDYQVYGIALQAITAKAIANDCDIPSSTIASFL
SKYDSGNLEINNKTVLILDEAGMVGSRDMQRLLMLVEKHDAQIKLVGDSYQLSAVSAGHV
FANIQENLDKKNIASLEDIQRQKHAKESDKMIQASKYLSKHEVGKAIDIYKSINMVNEYE
SHDLALAKTVKSWSEDSSESKLMLAHSNSDVNELNRMARALLIKQGKLNPESVSVKNYQG
DLDISIGEKIVFKQNNSQMKVSNGELAKVIGFEKDKFNNPKAMMVQMESDSRIVRVDLKE
YDQFKHGYANTIHSSQGMTVDSAYIVASENMNANLTYVALTRHKQNIQINYSALTFATNE
KETVKTPDGKVSYDHNYKPVEREVTAFENFKKVLGRSETKEFSTDFTLVESKDNLMKSYL
NDHRLHLENKRELFGINSKLYSLTSENKTFTKEEIVSEVRASLKSKALLGDEIVKFNGNM
NIAKGELVKLTNDLEIKTGLFKKVTFEKGTELKVIDAYKVKDKPVMKARIKNEEYEIPFN
KLNLEYSDKYFNEFKDQSKARFDSRHKTEVYTEFREQLLKQKANAPKDNLNAPNQRIKNP
NTPNRNTPKY
Reference
 N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
 N/A
 N/A
Information of plasmid
ID 1159
Plasmid name p6200-47.274kb
GenBank accession number NZ_CP010399.1
Genome size 47274 bp
Coordinate of oriT  [Strand] 37700..37737 [+]
Drug resistance _
Heavy-metal resistance _
Virulence factor _
Xenobiotic degradation _
Host bacterium [NCBI Taxonomy ID] Acinetobacter baumannii 6200 [470]
Reference
 N/A

Microbial Bioinformatics Group in MML, SJTU