oriTDB
The information of the oriT region
oriTDB accession number 100697
Name oriT_p34977-5.006kb  insolico
Sequence Completeness intact
oriT length 193 nt
oriT sequence GCGGCAGTGGTTTTAGCGGGTTTCGGGGCGCAGCCCTGAACCAGTCACGTAGCGCTAGCG GAGTGTATACTGGCTTATTATGTTACGGCGGAGTGGTGATTTATGAAAGTGCTTCATGTA GCAAGGGAAAAATGCGGCTGCCGGGCGTAGGTGCAACATGCGGGTAAAGGTGAAATGACG CCTCCTCGCTCAC
IR (inverted repeat)[22-29] [33-40] nt  (TTCGGGGC..GCCCTGAA)
Location of nic site [73-74] nt
Conserved sequence flanking the
  nic site 		CTGG|CTTA
Note predicted by the oriTfinder
L:22-29;R:33-40;D:73-74
Visualization of oriT structure
Reference
 N/A
I. Information of Relaxase
ID 769
Name Putative relaxase of p34977-5.006kb insolico
GenBank accession number WP_040117005
Family MOBP
Length 499 aa
UniProt ID A0A0E1J6W6
PDB ID _
Pfam Relaxase [PF03432.13], Evalue: 3.40E-15, Aligned region: 41..273
Note putative relaxase
Protein sequence [Download] MIVKFHPRGRGGGAGPVDYLLGKDRQRDGASVLQGKPEEVRELIDASPYAKKYTSGVLSF
AEKDLPPGQREKLMAGFEQVLMPGLDKDQYSVLWVEHRDKGRLELNFLIPNTELLTGRRL
QPYYDRADRPRIDAWQTIVNGRLGLHDPNAPENRRALVTPSALPEAKLEAAQAITRGLLT
LAASGELKTRQDVTEALKSAGFDVVRTTKSSISIADPDGGRNIRLKGAIYEQSFNAGEEL
RAEIESAAADYRRDAESRIQRAREVCQSGTERKREENQRRHPRPRPETVLGHEPAHERHG
AHGQPDVADHRPGVRAADSLRRGHSVVAGTADSRQLHDHPGADAHAGHAVREEQRRAAHD
LRGEETPLREGEPGSGTIRRGFELDDTGGEIAHDRAGKTVAERIRAATAGLLEKAGRVGE
RLRGMADDVWSYATGERGAERARHGLEQAGAEFERAAAPVVERLNGIETHREQVRAAQHQ
KELELERSQRQRTYDGPSL
Reference
 N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
 N/A
 N/A
Information of plasmid
ID 1157
Plasmid name p34977-5.006kb
GenBank accession number NZ_CP010375.2
Genome size 5007 bp
Coordinate of oriT  [Strand] 1339..1531 [-]
Drug resistance _
Heavy-metal resistance _
Virulence factor _
Xenobiotic degradation _
Host bacterium [NCBI Taxonomy ID] Enterobacter hormaechei subsp. steigerwaltii 34977 [299766]
Reference
 N/A

Microbial Bioinformatics Group in MML, SJTU