oriTDB

The information of the oriT region

oriTDB accession number	100682
Name	oriT_pM11-E
Sequence Completeness	intact
oriT length	83 nt
oriT sequence	GGGTGTCGGGGCGCAGCCATGACCCAGTCACGTAGCGATAGCGGAGTGTATACTAGCTTA ACTATGCAGCATCAGTGCAGATT
IR (inverted repeat)	[3-12] [16-25] nt (GTGTCGGGGC..GCCATGACCC)
Location of nic site	[56-57] nt
Conserved sequence flanking the nic site	CTAG\|CTTA
Note	predicted by the oriTfinder
	L:3-12;R:16-25;D:56-57

Visualization of oriT structure

1...5....10....15....20....25....30....35....40....45....50....55....60

1

GGGTGTCGGGGCGCAGCCATGACCCAGTCACGTAGCGATAGCGGAGTGTATACTAGCTTA

61

ACTATGCAGCATCAGTGCAGATT

Reference
N/A

I. Information of Relaxase

ID	754
Name	MobC_pM11-E
GenBank accession number	WP_000956000
Family	Other
Length	107 aa
UniProt ID	_
PDB ID	_
Pfam	MobC [PF05713.10], Evalue: 1.20E-12, Aligned region: 50..94
Note	putative relaxase
Protein sequence [Download]	MLTIRVTDDEHARLLERCEGKQLAVWMRRVCLGEPVARSGKLPTLAPPLLRQLAAIGNNL NQTARKVNSGQWSSGDRVQVVAALMAIGDELRRLRLAVREQGTRDDS

Reference
N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
N/A

N/A

Information of plasmid

ID	1142
Plasmid name	pM11-E
GenBank accession number	NZ_CP010211.1
Incompatibility group	ColRNAI
Genome size	6039 bp
Coordinate of oriT [Strand]	467..549 [-]
Drug resistance	_
Heavy-metal resistance	_
Virulence factor	_
Xenobiotic degradation	_
Host bacterium [NCBI Taxonomy ID]	Escherichia coli M11 [562]

Reference
N/A