oriTDB

The information of the oriT region

oriTDB accession number	100680
Name	oriT_pM9-C
Sequence Completeness	intact
oriT length	68 nt
oriT sequence	GCCATGACCCAGTCACGTAGCGATAGCGGAGTGTATACTAGCTTAACTATGCAGCATCAG TGCAGATT
IR (inverted repeat)	[1-10] [12-21] nt (GCCATGACCC..GTCACGTAGC)
Location of nic site	[41-42] nt
Conserved sequence flanking the nic site	CTAG\|CTTA
Note	predicted by the oriTfinder
	L:1-10;R:12-21;D:41-42

Visualization of oriT structure

1...5....10....15....20....25....30....35....40....45....50....55....60

1

GCCATGACCCAGTCACGTAGCGATAGCGGAGTGTATACTAGCTTAACTATGCAGCATCAG

61

TGCAGATT

Reference
N/A

I. Information of Relaxase

ID	752
Name	MobC_pM9-C
GenBank accession number	WP_000956000
Family	Other
Length	107 aa
UniProt ID	_
PDB ID	_
Pfam	MobC [PF05713.10], Evalue: 1.20E-12, Aligned region: 50..94
Note	putative relaxase
Protein sequence [Download]	MLTIRVTDDEHARLLERCEGKQLAVWMRRVCLGEPVARSGKLPTLAPPLLRQLAAIGNNL NQTARKVNSGQWSSGDRVQVVAALMAIGDELRRLRLAVREQGTRDDS

Reference
N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
N/A

N/A

Information of plasmid

ID	1140
Plasmid name	pM9-C
GenBank accession number	NZ_CP010199.1
Incompatibility group	ColRNAI
Genome size	6039 bp
Coordinate of oriT [Strand]	1..68 [+]
Drug resistance	_
Heavy-metal resistance	_
Virulence factor	_
Xenobiotic degradation	_
Host bacterium [NCBI Taxonomy ID]	Escherichia coli M9 [562]

Reference
N/A