oriTDB
The information of the oriT region
oriTDB accession number 100680
Name oriT_pM9-C  insolico
Sequence Completeness intact
oriT length 68 nt
oriT sequence GCCATGACCCAGTCACGTAGCGATAGCGGAGTGTATACTAGCTTAACTATGCAGCATCAG TGCAGATT
IR (inverted repeat)[1-10] [12-21] nt  (GCCATGACCC..GTCACGTAGC)
Location of nic site [41-42] nt
Conserved sequence flanking the
  nic site 		CTAG|CTTA
Note predicted by the oriTfinder
L:1-10;R:12-21;D:41-42
Visualization of oriT structure
Reference
 N/A
I. Information of Relaxase
ID 752
Name MobC_pM9-C insolico
GenBank accession number WP_000956000
Family Other
Length 107 aa
UniProt ID _
PDB ID _
Pfam MobC [PF05713.10], Evalue: 1.20E-12, Aligned region: 50..94
Note putative relaxase
Protein sequence [Download] MLTIRVTDDEHARLLERCEGKQLAVWMRRVCLGEPVARSGKLPTLAPPLLRQLAAIGNNL
NQTARKVNSGQWSSGDRVQVVAALMAIGDELRRLRLAVREQGTRDDS
Reference
 N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
 N/A
 N/A
Information of plasmid
ID 1140
Plasmid name pM9-C
GenBank accession number NZ_CP010199.1
Incompatibility group ColRNAI
Genome size 6039 bp
Coordinate of oriT  [Strand] 1..68 [+]
Drug resistance _
Heavy-metal resistance _
Virulence factor _
Xenobiotic degradation _
Host bacterium [NCBI Taxonomy ID] Escherichia coli M9 [562]
Reference
 N/A

Microbial Bioinformatics Group in MML, SJTU