oriTDB
The information of the oriT region
oriTDB accession number 100678
Name oriT_pM6-B  insolico
Sequence Completeness intact
oriT length 83 nt
oriT sequence GGGTGTCGGGGCGCAGCCATGACCCAGTCACGTAGCGATAGCGGAGTGTATACTAGCTTA ACTATGCAGCATCAGTGCAGATT
IR (inverted repeat)[3-12] [16-25] nt  (GTGTCGGGGC..GCCATGACCC)
Location of nic site [56-57] nt
Conserved sequence flanking the
  nic site 		CTAG|CTTA
Note predicted by the oriTfinder
L:3-12;R:16-25;D:56-57
Visualization of oriT structure
Reference
 N/A
I. Information of Relaxase
ID 750
Name MobC_pM6-B insolico
GenBank accession number WP_000956000
Family Other
Length 107 aa
UniProt ID _
PDB ID _
Pfam MobC [PF05713.10], Evalue: 1.20E-12, Aligned region: 50..94
Note putative relaxase
Protein sequence [Download] MLTIRVTDDEHARLLERCEGKQLAVWMRRVCLGEPVARSGKLPTLAPPLLRQLAAIGNNL
NQTARKVNSGQWSSGDRVQVVAALMAIGDELRRLRLAVREQGTRDDS
Reference
 N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
 N/A
 N/A
Information of plasmid
ID 1138
Plasmid name pM6-B
GenBank accession number NZ_CP010188.1
Incompatibility group ColRNAI
Genome size 6039 bp
Coordinate of oriT  [Strand] 2779..2861 [+]
Drug resistance _
Heavy-metal resistance _
Virulence factor _
Xenobiotic degradation _
Host bacterium [NCBI Taxonomy ID] Escherichia coli M6 [562]
Reference
 N/A

Microbial Bioinformatics Group in MML, SJTU