oriTDB
The information of the oriT region
oriTDB accession number 100674
Name oriT_pH3-A  insolico
Sequence Completeness intact
oriT length 354 nt
oriT sequence ACTCCGATACGTTGCCCTCCGAACGGTATTCAAGGTCGATTTTTTGCTCTTCGGTCACTC TCAAACTGATAGATGGCATAGGTTTCCTTTGTGTAATACAGATGTAATACATACAAATCT AGCATACATGCGGCTTAGAACCACATGTGTAATACGTTGCGTATTACACATTAAAACACA AATTATAATAATTTGTTTTGTTTTCAAGCATTTACGATGAAATCGTAATTGCGTATGGTG TATGGCCATTAAGGGATACCATACCACGCCTTTTTTAAGGGAGAAACCGGTGTTACGTGC AAGTAAATCGCTCAAAAAGCGTTCACATTCACCACTTTCATGCTTGCATGAAAG
IR (inverted repeat)IR1: [145-155] [161-171] nt  (ATGTGTAATAC..GTATTACACAT)
IR2: [208-218] [222-232] nt  (GCATTTACGAT..ATCGTAATTGC)
IR3: [335-343] [346-354] nt  (CTTTCATGC..GCATGAAAG)
Location of nic site [241-242] nt
Conserved sequence flanking the
  nic site
GGTGT|ATGGC
Note predicted by the oriTfinder
L:145-155;R:161-171;L:208-218;R:222-232;L:335-343;R:346-354;D:241-242
Visualization of oriT structure
1...5....10....15....20....25....30....35....40....45....50....55....60
1

ACTCCGATACGTTGCCCTCCGAACGGTATTCAAGGTCGATTTTTTGCTCTTCGGTCACTC

61

TCAAACTGATAGATGGCATAGGTTTCCTTTGTGTAATACAGATGTAATACATACAAATCT

121

AGCATACATGCGGCTTAGAACCACATGTGTAATACGTTGCGTATTACACATTAAAACACA

181

AATTATAATAATTTGTTTTGTTTTCAAGCATTTACGATGAAATCGTAATTGCGTATGGTG

241

TATGGCCATTAAGGGATACCATACCACGCCTTTTTTAAGGGAGAAACCGGTGTTACGTGC

301

AAGTAAATCGCTCAAAAAGCGTTCACATTCACCACTTTCATGCTTGCATGAAAG

Reference
 N/A