oriTDB
The information of the oriT region
oriTDB accession number 100668
Name oriT_pC8-C  insolico
Sequence Completeness intact
oriT length 83 nt
oriT sequence GGGTGTCGGGGCGCAGCCCTGACCCAGTCACGTAGCGATAGCGGAGTGTATACTGGCTTA GCCATGCGGCATCAGTGCGGATT
IR (inverted repeat)[3-12] [16-25] nt  (GTGTCGGGGC..GCCCTGACCC)
Location of nic site [56-57] nt
Conserved sequence flanking the
  nic site 		CTGG|CTTA
Note predicted by the oriTfinder
L:3-12;R:16-25;D:56-57
Visualization of oriT structure
Reference
 N/A
I. Information of Relaxase
ID 740
Name MobC_pC8-C insolico
GenBank accession number WP_000956000
Family Other
Length 107 aa
UniProt ID _
PDB ID _
Pfam MobC [PF05713.10], Evalue: 1.20E-12, Aligned region: 50..94
Note putative relaxase
Protein sequence [Download] MLTIRVTDDEHARLLERCEGKQLAVWMRRVCLGEPVARSGKLPTLAPPLLRQLAAIGNNL
NQTARKVNSGQWSSGDRVQVVAALMAIGDELRRLRLAVREQGTRDDS
Reference
 N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
 N/A
 N/A
Information of plasmid
ID 1128
Plasmid name pC8-C
GenBank accession number NZ_CP010128.1
Incompatibility group ColRNAI
Genome size 7982 bp
Coordinate of oriT  [Strand] 1637..1719 [+]
Drug resistance _
Heavy-metal resistance _
Virulence factor _
Xenobiotic degradation _
Host bacterium [NCBI Taxonomy ID] Escherichia coli C8 [562]
Reference
 N/A

Microbial Bioinformatics Group in MML, SJTU