oriTDB
The information of the oriT region
oriTDB accession number 100653
Name oriT_pXF51ud  insolico
Sequence Completeness core
oriT length 42 nt
oriT sequence ATAGCGGTTTTAAAACCTATCCTGCCCTAGATTTAACCCTCT
IR (inverted repeat)[6-11] [12-17] nt  (GGTTTT..AAAACC)
Location of nic site [24-25] nt
Conserved sequence flanking the
  nic site 		TATCCTG|C
Note predicted by the oriTfinder
L:6-11;R:12-17;D:24-25
Visualization of oriT structure
Reference
 N/A
I. Information of Relaxase
ID 725
Name Nickase_pXF51ud insolico
GenBank accession number WP_010895239
Family MOBP
Length 463 aa
UniProt ID _
PDB ID _
Pfam Relaxase [PF03432.13], Evalue: 8.50E-09, Aligned region: 55..323
Note putative relaxase
Protein sequence [Download] MAGRLMGIIEAELGSALSPAVKRKVNNTKKLRSTAKRVTGRSSEVMVKVTGFGKGAGHVK
AHLDYITRNGKLEMENDRGEIFNGKEEVKEFFKDWEKDFGDGKRHKNQRDTMHMVLSMPE
TTDSESVKKSVREFAKATFGKNHEYVFVLHTDEPHPHCHLTVKCLGFDGIRLNPRKADLH
QWREGFAEKLRDQGVEAEATPRRSRGVVKKAEPNVIRHIERGDKTHEPRVSKVKAAKVKE
AAMELVAESKGLPVPPKPWEEAIKARQREIRRAWLTVAAELERENTRKTFNQKEARNDRP
NYERISAEQARPAQRAASVYQSNLTKAGRQAPSRTVSSLRNVSCLGVVQHRSSSKMLLQP
NAPDRMGRNGRPNSEMRRSGTSNNGVDRDAKMLLDVYKPIEQNKVLAWRIRSFVEAMPSI
ETERHQIKRDLAQRFTKQAEKIHRKTNGQEQTGPKRGGKDVER
Reference
 N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
 N/A
 N/A
Information of plasmid
ID 1113
Plasmid name pXF51ud
GenBank accession number NZ_CP009791.1
Genome size 51156 bp
Coordinate of oriT  [Strand] 39537..39578 [+]
Drug resistance _
Heavy-metal resistance _
Virulence factor insolico virulence factor
Xenobiotic degradation _
Host bacterium [NCBI Taxonomy ID] Xylella fastidiosa U24D [2371]
Reference
 N/A

Microbial Bioinformatics Group in MML, SJTU