oriTDB

The information of the oriT region

oriTDB accession number	100653
Name	oriT_pXF51ud
Sequence Completeness	core
oriT length	42 nt
oriT sequence	ATAGCGGTTTTAAAACCTATCCTGCCCTAGATTTAACCCTCT
IR (inverted repeat)	[6-11] [12-17] nt (GGTTTT..AAAACC)
Location of nic site	[24-25] nt
Conserved sequence flanking the nic site	TATCCTG\|C
Note	predicted by the oriTfinder
	L:6-11;R:12-17;D:24-25

Visualization of oriT structure

1...5....10....15....20....25....30....35....40....45....50....55....60

1

ATAGCGGTTTTAAAACCTATCCTGCCCTAGATTTAACCCTCT

Reference
N/A

I. Information of Relaxase

ID	725
Name	Nickase_pXF51ud
GenBank accession number	WP_010895239
Family	MOB_P
Length	463 aa
UniProt ID	_
PDB ID	_
Pfam	Relaxase [PF03432.13], Evalue: 8.50E-09, Aligned region: 55..323
Note	putative relaxase
Protein sequence [Download]	MAGRLMGIIEAELGSALSPAVKRKVNNTKKLRSTAKRVTGRSSEVMVKVTGFGKGAGHVK AHLDYITRNGKLEMENDRGEIFNGKEEVKEFFKDWEKDFGDGKRHKNQRDTMHMVLSMPE TTDSESVKKSVREFAKATFGKNHEYVFVLHTDEPHPHCHLTVKCLGFDGIRLNPRKADLH QWREGFAEKLRDQGVEAEATPRRSRGVVKKAEPNVIRHIERGDKTHEPRVSKVKAAKVKE AAMELVAESKGLPVPPKPWEEAIKARQREIRRAWLTVAAELERENTRKTFNQKEARNDRP NYERISAEQARPAQRAASVYQSNLTKAGRQAPSRTVSSLRNVSCLGVVQHRSSSKMLLQP NAPDRMGRNGRPNSEMRRSGTSNNGVDRDAKMLLDVYKPIEQNKVLAWRIRSFVEAMPSI ETERHQIKRDLAQRFTKQAEKIHRKTNGQEQTGPKRGGKDVER

Reference
N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
N/A

N/A

Information of plasmid

ID	1113
Plasmid name	pXF51ud
GenBank accession number	NZ_CP009791.1
Genome size	51156 bp
Coordinate of oriT [Strand]	39537..39578 [+]
Drug resistance	_
Heavy-metal resistance	_
Virulence factor	virulence factor
Xenobiotic degradation	_
Host bacterium [NCBI Taxonomy ID]	Xylella fastidiosa U24D [2371]

Reference
N/A