 oriTDB accession number | 100633 |
| Name | oriT_pAt  |
Sequence Completeness  | core |
| oriT length | 37 nt |
| oriT sequence | CCAAGGGCGCAATTATACGTCGTGATACGACGCGTTG |
| IR (inverted repeat) | [18-23] [27-32] nt (CGTCGT..ACGACG) |
| Location of nic site | [7-8] nt |
| Conserved sequence flanking the nic site | _ |
| Note | predicted by the oriTfinder |
Visualization of oriT structure Reference| ID | 705 |
| Name | TraA_pAt |
| GenBank accession number | WP_038496873 |
| Family | MOBQ |
| Length | 1100 aa |
| UniProt ID | W8FLP9 |
| PDB ID | _ |
| Pfam | MobA_MobL [PF03389.14], Evalue: 1.30E-73, Aligned region: 17..243 AAA_30 [PF13604.5], Evalue: 7.00E-56, Aligned region: 381..569 Viral_helicase1 [PF01443.17], Evalue: 8.30E-05, Aligned region: 661..737 AAA_19 [PF13245.5], Evalue: 3.40E-09, Aligned region: 386..513 UvrD_C_2 [PF13538.5], Evalue: 1.90E-06, Aligned region: 692..736 |
| Note | putative relaxase |
| Protein sequence [Download] | MAIAHFSASIVSRGSGRSVVLSAAYRHCAKMEFEREARTIDYTRKQGLLHEEFVLPANAP EWARSLIADRSVSGAVEAFWNKVETFEKRADAQLARDLTIALPLELSAEQNIALVRDFVE NHILAKGMVADWVYHENPGNPHIHLMTTLRPLSDESFGSKKVAVIGEDGQPVRTKSGKIL YELWAGSTDDFNVLRDGWFERLNHHLALGGIDLKIDGRSYEKQGINLEPTIHLGVGAKAI ERKAEQRGVRPELERVELNEQRRSENTRRILNNPAIVLDLITREKSVFDERDVAKVLHRY IDDPALFQQLMIKIILNRQVLRLQRETIDFSTGEKLPARYSTRAMIRLEATMARQATWLS NREGRGVSPTALDATFRRHERLSDEQKAAIEHVAGPARIAAVVGRAGAGKTTMMKAAREA WELAGYHVVGGALAGKAAEGLEKEAGIQSRTLASWELRWKRGRDLLDDKTIFIMDEAGMV ASKQMAGFVDTAVRAGAKIVLVGDPEQLQPIEAGAAFRAIVDRIGYAELETIYRQREEWM RKASLDLARGNVENALSAYRANVRITGERLKAEAVERLIADWNHDYDQTKTILILAHLRR DVRMLNVMAREKLVERGMVGEGHLFRTADGERRFDAGDQIVFLKNEGSLGLKNGMIGHVV VAAANRIVATVGEGDQRRQVIVEQRFYNNLDHGYATTIHKSQGATVDRVKVLASLSLDRH LTYVAMTRHREDLQLYYGTRSFSFNGGLAKVLSRRQAKETTLDYEHGQFYREALRFAETR GLHVVQVARTMVRDRLDWTLRQKAKLVDLSRRLAAFAAHLGITQSPKTQTMKETAPMVAG IKTFSGSVSDIVGDRLGTDPSLKRQWEEVSARFAYVFADPETAFRAMNFDALLADKEVAK QILQKLEAEPGSIGPLKGKTGILASKPEREARRVAEVNVPALKRDLEQYLRMRETVTQRL QTDEQSLRQRVSIDIPALSPAARVVLERVRDAIDRNDLPAAMAYAISNRETKLEIDGFNR AVTERFGERTLLSNSAREPSGKLYEKLSESMKPEQKGQLKQAWSVMRTAQQLAAHERTVQ SLRQAEEQRLTQRQTPVLKQ |
Reference| ID | 1093 |
| Plasmid name | pAt |
| GenBank accession number | NZ_CP007227.1 |
| Genome size | 556485 bp |
| Coordinate of oriT [Strand] | 303656..303692 [-] |
| Drug resistance | _ |
| Heavy-metal resistance | mercury resistance |
| Virulence factor | _ |
| Xenobiotic degradation | _ |
| Host bacterium [NCBI Taxonomy ID] | Agrobacterium tumefaciens LBA4213 (Ach5) [1435057] |
Reference| [1] Henkel CV et al (2014) Genome Sequence of the Octopine-Type Agrobacterium tumefaciens Strain Ach5. Genome Announc. 2(2). [PMID:24675863] |