oriTDB
The information of the oriT region
oriTDB accession number 100630
Name oriT_pCC1557  insolico
Sequence Completeness intact
oriT length 146 nt
oriT sequence CGAAATCGCTAAACAGGCACGTTACCGATTGTCTACAAAAAAGAGCTTCGCCTTTTTCGT AGCCAATCGACGTGCCAAAGGGGATACCCCTTTGAAACCCCGCGGAGCGGGAAAGCGTTG TTGTTGTCGTTGTTGGTTGTCGTCAT
IR (inverted repeat)IR1: [38-43] [52-57] nt  (AAAAAG..CTTTTT)
IR2: [72-83] [87-98] nt  (GTGCCAAAGGGG..CCCCTTTGAAAC)
Location of nic site _
Conserved sequence flanking the
  nic site 		_
Note predicted by the oriTfinder
L:38-43;R:52-57;L:72-83;R:87-98
Visualization of oriT structure
Reference
 N/A
I. Information of Relaxase
ID 702
Name Relaxase_pCC1557 insolico
GenBank accession number WP_080274973
Family MOBP
Length 1249 aa
UniProt ID _
PDB ID _
Pfam Relaxase [PF03432.13], Evalue: 3.40E-07, Aligned region: 10..266
Note putative relaxase
Protein sequence [Download] MLIRVSGYNTGAQEYLEQGNKSGREFTRDELDHRLIIEGQLSVTRAIYESIPDHGQDRYL
TFTLSFKEDTVSPELLKAVTTDFKNFFMHAYKPEEFNLYAEAHLPKMKTVTDRKTGEVID
RKPHIHIIIPRINLLSGNEANPVDVYKNHEKYFEAFQEHINQKYGLSSPRENVRADITDA
ASVLSRYKGDDFYGKNRQFKQQLVKQVIERGVTSRADFYALVAEHGETRIRNEGKDNEYI
SVKLPGDAKGTNLKDTIFQDAFIVRRELKKPPLEASVIQDRLLAWPQRAREIKYVNKATP
KFRKQYSQASPEERVRLLAERENNFYRAHGDDYESVHTWQRQRDNQRSPAETAGRRTAAP
ADGLQDLSVSDVADHRQAGPTRSRDGALLLPSDAHVHVGQSQPGGDSGLRSSVPAGGRGR
RAGSTTERGRGGSQPAAVSQETKGTATPAGTTGRRRAGAGKPRNTRVRAGRVVPPYAQNP
HRVATIADIEERGRRLFDPLKRPSDNALVFYRSSSRPQVAGQLPQARAATTTPVQSTAGR
RPRSSGKPRPPRQWRPGAVPPYAKNPHRVATVADIEQRARMLFDPLKRPADKALVFKRAS
IKALTVNKHASTVAAYFTRQAQHNQIAPAHRRAIRRIDQQYFALRRAVFSDQRLTRQDKA
QLVSVLTFERLKAREQFHNPKPNIEVNLMGSAAIRNLLDDEKEDPGFSISGARGPAPEGV
RERVKRVMDRFAKQVDPVAASERARDLSAKDLYTRKAKFSQNVHYLDKQTDKTLFVDTGT
TISMRRTGITEAGVSVALQLARERFGSTLTINGTAEFKKLVIEAVAKNGLDVHFTDKAMN
QSLADRRAELDIERDGQSIGPATDLPRHVDDATRDVRDQADHLGVTVPIEALYGQGKTAD
QVSQALATQLDTVPEPERIAFVETVAITLGIPERGQPKGDQAFAQWQAQRAQPAANSAAS
ATSEAQANVPTPSDAVSEPVSPEAAKPALANDPDLQSPSELVRLEAQWRRDFPMSEAEVR
ASDTVMGLRGEDHAVWIIATNDKTPEAAALLTAYMENDSYREAFKASIVAAYKQVENSPK
LVDDLDHLTAMAAQIVNEVEERLFPTPQAATGQTAPSRSKVIEGTLIEHGEAPYQHNDDN
QMSYFVTLKPEGGKPRTVWGVGLEEAMSDADLKQGDQVRLQDLGTQPVVVQVIEEDGTVT
DKTVNRREWSAQPVAPEREVAETTPKGQAAAAGTPELSSPDEDDGMSVD
Reference
 N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
 N/A
 N/A
Information of plasmid
ID 1090
Plasmid name pCC1557
GenBank accession number NZ_CP007015.1
Genome size 53629 bp
Coordinate of oriT  [Strand] 26868..27013 [+]
Drug resistance _
Heavy-metal resistance _
Virulence factor _
Xenobiotic degradation _
Host bacterium [NCBI Taxonomy ID] Pseudomonas syringae CC1557 [1357279]
Reference
 N/A

Microbial Bioinformatics Group in MML, SJTU