oriTDB

The information of the oriT region

oriTDB accession number	100630
Name	oriT_pCC1557
Sequence Completeness	intact
oriT length	146 nt
oriT sequence	CGAAATCGCTAAACAGGCACGTTACCGATTGTCTACAAAAAAGAGCTTCGCCTTTTTCGT AGCCAATCGACGTGCCAAAGGGGATACCCCTTTGAAACCCCGCGGAGCGGGAAAGCGTTG TTGTTGTCGTTGTTGGTTGTCGTCAT
IR (inverted repeat)	IR1: [38-43] [52-57] nt (AAAAAG..CTTTTT) IR2: [72-83] [87-98] nt (GTGCCAAAGGGG..CCCCTTTGAAAC)
Location of nic site	_
Conserved sequence flanking the nic site	_
Note	predicted by the oriTfinder
	L:38-43;R:52-57;L:72-83;R:87-98

Visualization of oriT structure

1...5....10....15....20....25....30....35....40....45....50....55....60

1

CGAAATCGCTAAACAGGCACGTTACCGATTGTCTACAAAAAAGAGCTTCGCCTTTTTCGT

61

AGCCAATCGACGTGCCAAAGGGGATACCCCTTTGAAACCCCGCGGAGCGGGAAAGCGTTG

121

TTGTTGTCGTTGTTGGTTGTCGTCAT

Reference
N/A

I. Information of Relaxase

ID	702
Name	Relaxase_pCC1557
GenBank accession number	WP_080274973
Family	MOB_P
Length	1249 aa
UniProt ID	_
PDB ID	_
Pfam	Relaxase [PF03432.13], Evalue: 3.40E-07, Aligned region: 10..266
Note	putative relaxase
Protein sequence [Download]	MLIRVSGYNTGAQEYLEQGNKSGREFTRDELDHRLIIEGQLSVTRAIYESIPDHGQDRYL TFTLSFKEDTVSPELLKAVTTDFKNFFMHAYKPEEFNLYAEAHLPKMKTVTDRKTGEVID RKPHIHIIIPRINLLSGNEANPVDVYKNHEKYFEAFQEHINQKYGLSSPRENVRADITDA ASVLSRYKGDDFYGKNRQFKQQLVKQVIERGVTSRADFYALVAEHGETRIRNEGKDNEYI SVKLPGDAKGTNLKDTIFQDAFIVRRELKKPPLEASVIQDRLLAWPQRAREIKYVNKATP KFRKQYSQASPEERVRLLAERENNFYRAHGDDYESVHTWQRQRDNQRSPAETAGRRTAAP ADGLQDLSVSDVADHRQAGPTRSRDGALLLPSDAHVHVGQSQPGGDSGLRSSVPAGGRGR RAGSTTERGRGGSQPAAVSQETKGTATPAGTTGRRRAGAGKPRNTRVRAGRVVPPYAQNP HRVATIADIEERGRRLFDPLKRPSDNALVFYRSSSRPQVAGQLPQARAATTTPVQSTAGR RPRSSGKPRPPRQWRPGAVPPYAKNPHRVATVADIEQRARMLFDPLKRPADKALVFKRAS IKALTVNKHASTVAAYFTRQAQHNQIAPAHRRAIRRIDQQYFALRRAVFSDQRLTRQDKA QLVSVLTFERLKAREQFHNPKPNIEVNLMGSAAIRNLLDDEKEDPGFSISGARGPAPEGV RERVKRVMDRFAKQVDPVAASERARDLSAKDLYTRKAKFSQNVHYLDKQTDKTLFVDTGT TISMRRTGITEAGVSVALQLARERFGSTLTINGTAEFKKLVIEAVAKNGLDVHFTDKAMN QSLADRRAELDIERDGQSIGPATDLPRHVDDATRDVRDQADHLGVTVPIEALYGQGKTAD QVSQALATQLDTVPEPERIAFVETVAITLGIPERGQPKGDQAFAQWQAQRAQPAANSAAS ATSEAQANVPTPSDAVSEPVSPEAAKPALANDPDLQSPSELVRLEAQWRRDFPMSEAEVR ASDTVMGLRGEDHAVWIIATNDKTPEAAALLTAYMENDSYREAFKASIVAAYKQVENSPK LVDDLDHLTAMAAQIVNEVEERLFPTPQAATGQTAPSRSKVIEGTLIEHGEAPYQHNDDN QMSYFVTLKPEGGKPRTVWGVGLEEAMSDADLKQGDQVRLQDLGTQPVVVQVIEEDGTVT DKTVNRREWSAQPVAPEREVAETTPKGQAAAAGTPELSSPDEDDGMSVD

Reference
N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
N/A

N/A

Information of plasmid

ID	1090
Plasmid name	pCC1557
GenBank accession number	NZ_CP007015.1
Genome size	53629 bp
Coordinate of oriT [Strand]	26868..27013 [+]
Drug resistance	_
Heavy-metal resistance	_
Virulence factor	_
Xenobiotic degradation	_
Host bacterium [NCBI Taxonomy ID]	Pseudomonas syringae CC1557 [1357279]

Reference
N/A