oriTDB
The information of the oriT region
oriTDB accession number 100629
Name oriT_pRetIE4771a  insolico
Sequence Completeness core
oriT length 31 nt
oriT sequence AAGGGCGCAATTATACGTCGCTGGCGCGACG
IR (inverted repeat)[16-21] [26-31] nt  (CGTCGC..GCGACG)
Location of nic site [5-6] nt
Conserved sequence flanking the
  nic site 		AGGG|CGCA
Note predicted by the oriTfinder
L:16-21;R:26-31;D:5-6
Visualization of oriT structure
Reference
 N/A
I. Information of Relaxase
ID 701
Name TraA_pRetIE4771a insolico
GenBank accession number WP_040140156
Family MOBQ
Length 1103 aa
UniProt ID A0A060IDC2
PDB ID _
Pfam MobA_MobL [PF03389.14], Evalue: 3.00E-75, Aligned region: 17..243
AAA_30 [PF13604.5], Evalue: 1.10E-57, Aligned region: 381..570
AAA_19 [PF13245.5], Evalue: 5.00E-11, Aligned region: 386..513
Viral_helicase1 [PF01443.17], Evalue: 0.00017, Aligned region: 666..737
Note putative relaxase
Protein sequence [Download] MAVPHFSVSVVARGSGRSAVLSAAYRHCAKMDYDREARTIDYTRKQGLLHEEFVIPTDAP
EWLRSMIADRSVAGVSEAFWNRVEDFEKRSDAQLAKDVTIALPIELTAEQNIALVRDFVE
QHITAKGMVADWVYHDAPGNPHVHLMTTLRPLTADGFGAKKIAVTGPDGNPIRNDAGKIV
YELWAGSIDDFNAFRDGWFACQNRHLALAGLDIRVDGRSFEKQGIELEPTIHLGVGTKAI
ERKSDGASEPVELERLDLQEARRSENVRRIDRNPELVLALIMREKSVFDERDVAKILHRY
VDDAALFQSLMVRILLCPETFRIERERIDLASGIRVPAKYTTREMIRLEAEMANRAVWLS
RRSSHGVRDAVLAATFARHERLSDEQRTAIEHVAGPERIAAVIGRAGAGKTTMMKAAREA
WEAAGYRVVGAALAGKAAEGLEKEAGIISRTLASWELRWNQGRDLLGSKTVFVLDESGMV
SSRQMALFVEAVTKAGAKLVLVGDPEQLQPIEAGAAFRAIADRIGYAELETIYRQRQQWM
RDASLDLARGKVGSALDAYRANGKIIGSDLKADAVDNLITAWDRDYDPVKTSLILAHLRR
DVRMLNQMARIKLIERGVLDQGTMFKTADGERNFAVGDQIVFLKNEGSLGVKNGMLAKVV
EVGPGRITARIGDGENARQVVVEQRFYDNLDHGYATTIHKSQGATVDQVKVLASLSLDRH
LTYVAMTRHREDLAVYYGRRSFAKNGGLIPILSRRNAKETTLDYEKSDFYRQALHFAEAR
GLHLVNVARTLVRDRLEWVVSQKQKLANLGARLAAVAGKLGLVRGAAQSPSQNNIKEAKP
MVSGITTFAKSVDQAIEDKVAADPGLKKQWEEVSTRFHLVYAQPESAFKAVNVDVLLKDE
TVAKSTIAKIGSEPEHFGALKGKTGILSSRADKQEREKAQTIAPALARNLERYLRQRAEA
ERKFEVEERAVRLKVSIDIPALSPNAKQTLERVRDAIDRNDLPTGLGYALADKMVKAELE
GFAKAVSERFGERTFLSLAAKDPNGQTFNTVTSGMTAGQKAEVQAAWNSMRTVQQLAAHE
RTTEALKQAETLRQAKSQGLSLK
Reference
 N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
 N/A
 N/A
Information of plasmid
ID 1089
Plasmid name pRetIE4771a
GenBank accession number NZ_CP006987.1
Genome size 244771 bp
Coordinate of oriT  [Strand] 221232..221262 [+]
Drug resistance _
Heavy-metal resistance _
Virulence factor _
Xenobiotic degradation _
Host bacterium [NCBI Taxonomy ID] Rhizobium sp. IE4771 [1301032]
Reference
 N/A

Microbial Bioinformatics Group in MML, SJTU