oriTDB

The information of the oriT region

oriTDB accession number	100628
Name	oriT_pRgalR602a
Sequence Completeness	core
oriT length	45 nt
oriT sequence	GGATCCGAAGGGCGCAATTATACGTCGCTGACGCGACGCCCTTGC
IR (inverted repeat)	[23-28] [33-38] nt (CGTCGC..GCGACG)
Location of nic site	[12-13] nt
Conserved sequence flanking the nic site	_
Note	predicted by the oriTfinder
	L:23-28;R:33-38;D:12-13

Visualization of oriT structure

1...5....10....15....20....25....30....35....40....45....50....55....60

1

GGATCCGAAGGGCGCAATTATACGTCGCTGACGCGACGCCCTTGC

Reference
N/A

I. Information of Relaxase

ID	700
Name	TraA_pRgalR602a
GenBank accession number	WP_040114085
Family	MOB_Q
Length	1103 aa
UniProt ID	A0A0B4X635
PDB ID	_
Pfam	MobA_MobL [PF03389.14], Evalue: 2.50E-75, Aligned region: 17..243 AAA_30 [PF13604.5], Evalue: 1.90E-58, Aligned region: 381..570 AAA_19 [PF13245.5], Evalue: 4.90E-11, Aligned region: 386..513 Viral_helicase1 [PF01443.17], Evalue: 0.00013, Aligned region: 656..737
Note	putative relaxase
Protein sequence [Download]	MAVPHFSVSVVARGSGRSAVLSAAYRHCAKMEFEREARTIDYTRKQGLLHEEFVIPADAP EWLRSMIADRSVSGASEAFWNRVEDFEKRSDAQLAKDVTIALPIELTAEQNIALVRDFVE QQITATGMVADWVYHDAPGNPHVHLMTTLRPLTADGFGAKKVAVTGPDGNPIRNDAGKIV YELWAGSIDDFNVFRDGWFACQNRHLALAGLDIRVDGRSFEKQGIDLEPTIHLGVGTKAI ERKADGAAQPIELERLELQDAKRSENVRRIDRNPELVLDLIMREKSVFDERDVAKILHRY VDDAVLFQSLMVRILLCPETFRIERERLDLASGIREPAKYTTRDMIRLEAEMANRAVWLS QRSTHGVREAVLAATFARHERLSDEQKTAIEHVAGPERIAAVIGRAGAGKTTMMKAAREA WEAAGYRVVGAALAGKAAEGLEKEAGIISRTLASWELRWNQGRDQLDGKTVFVLDEAGMV SSRQMALFVEAVTKAGAKLVLVGDPEQLQPIEAGAAFRAIADRIGYAELETIYRQRQQWM RDASLDLARGKVGSAVDAYRANGRVIGSDLKADAVDNLIAAWDRDYDPAKTSLILAHLRR DVRMLNQMARIKLIERGVLDQGTMFRTADGERNFAVGDQIVFLKNEGSLGVKNGMLAKVV ETGPGRITARIGEGEDARHVLVEQRFYNNLDHGYATTIHKSQGATVDQVKVLASLSLDRH LTYVAMTRHREDLAVYYGRRSFAKNGGLIPILSRSNAKETTLDYENSAFYRQALRFAEAR GLHLVNVARTLVRDRLEWVVSQKQKLANLGARLAAVAGRLGLIRGAAQYLTQNNTKEPKP MVSGITAFAKSVDQAIEDKVAVDPGLKKQWEEVSTRFHLVYAQPESAFKAVNVDAMLKDE TVATSTLAKLGSEPESFGALKGKTGILASRADKQEREKAQTNAPALARNLERYLRQRAEA ERKFEVEERAVRLKVSIDIPALSPNAKQTLERVRDAIDQNDLPAGLEYALADKMVKAELE GFAKAVSDRFGERTFLSLAAQDPSGQTFNAVTSGMTAGQKAEVQSAWNSMRTVQQLAAHE RTTEALKQAETLRQTKSQGLSLK

Reference
N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
N/A

N/A

Information of plasmid

ID	1088
Plasmid name	pRgalR602a
GenBank accession number	NZ_CP006878.1
Genome size	203748 bp
Coordinate of oriT [Strand]	194422..194466 [+]
Drug resistance	_
Heavy-metal resistance	_
Virulence factor	_
Xenobiotic degradation	_
Host bacterium [NCBI Taxonomy ID]	Rhizobium gallicum bv. gallicum R602 [1418105]

Reference
N/A