oriTDB
The information of the oriT region
oriTDB accession number 100628
Name oriT_pRgalR602a  insolico
Sequence Completeness core
oriT length 45 nt
oriT sequence GGATCCGAAGGGCGCAATTATACGTCGCTGACGCGACGCCCTTGC
IR (inverted repeat)[23-28] [33-38] nt  (CGTCGC..GCGACG)
Location of nic site [12-13] nt
Conserved sequence flanking the
  nic site 		_
Note predicted by the oriTfinder
L:23-28;R:33-38;D:12-13
Visualization of oriT structure
Reference
 N/A
I. Information of Relaxase
ID 700
Name TraA_pRgalR602a insolico
GenBank accession number WP_040114085
Family MOBQ
Length 1103 aa
UniProt ID A0A0B4X635
PDB ID _
Pfam MobA_MobL [PF03389.14], Evalue: 2.50E-75, Aligned region: 17..243
AAA_30 [PF13604.5], Evalue: 1.90E-58, Aligned region: 381..570
AAA_19 [PF13245.5], Evalue: 4.90E-11, Aligned region: 386..513
Viral_helicase1 [PF01443.17], Evalue: 0.00013, Aligned region: 656..737
Note putative relaxase
Protein sequence [Download] MAVPHFSVSVVARGSGRSAVLSAAYRHCAKMEFEREARTIDYTRKQGLLHEEFVIPADAP
EWLRSMIADRSVSGASEAFWNRVEDFEKRSDAQLAKDVTIALPIELTAEQNIALVRDFVE
QQITATGMVADWVYHDAPGNPHVHLMTTLRPLTADGFGAKKVAVTGPDGNPIRNDAGKIV
YELWAGSIDDFNVFRDGWFACQNRHLALAGLDIRVDGRSFEKQGIDLEPTIHLGVGTKAI
ERKADGAAQPIELERLELQDAKRSENVRRIDRNPELVLDLIMREKSVFDERDVAKILHRY
VDDAVLFQSLMVRILLCPETFRIERERLDLASGIREPAKYTTRDMIRLEAEMANRAVWLS
QRSTHGVREAVLAATFARHERLSDEQKTAIEHVAGPERIAAVIGRAGAGKTTMMKAAREA
WEAAGYRVVGAALAGKAAEGLEKEAGIISRTLASWELRWNQGRDQLDGKTVFVLDEAGMV
SSRQMALFVEAVTKAGAKLVLVGDPEQLQPIEAGAAFRAIADRIGYAELETIYRQRQQWM
RDASLDLARGKVGSAVDAYRANGRVIGSDLKADAVDNLIAAWDRDYDPAKTSLILAHLRR
DVRMLNQMARIKLIERGVLDQGTMFRTADGERNFAVGDQIVFLKNEGSLGVKNGMLAKVV
ETGPGRITARIGEGEDARHVLVEQRFYNNLDHGYATTIHKSQGATVDQVKVLASLSLDRH
LTYVAMTRHREDLAVYYGRRSFAKNGGLIPILSRSNAKETTLDYENSAFYRQALRFAEAR
GLHLVNVARTLVRDRLEWVVSQKQKLANLGARLAAVAGRLGLIRGAAQYLTQNNTKEPKP
MVSGITAFAKSVDQAIEDKVAVDPGLKKQWEEVSTRFHLVYAQPESAFKAVNVDAMLKDE
TVATSTLAKLGSEPESFGALKGKTGILASRADKQEREKAQTNAPALARNLERYLRQRAEA
ERKFEVEERAVRLKVSIDIPALSPNAKQTLERVRDAIDQNDLPAGLEYALADKMVKAELE
GFAKAVSDRFGERTFLSLAAQDPSGQTFNAVTSGMTAGQKAEVQSAWNSMRTVQQLAAHE
RTTEALKQAETLRQTKSQGLSLK
Reference
 N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
 N/A
 N/A
Information of plasmid
ID 1088
Plasmid name pRgalR602a
GenBank accession number NZ_CP006878.1
Genome size 203748 bp
Coordinate of oriT  [Strand] 194422..194466 [+]
Drug resistance _
Heavy-metal resistance _
Virulence factor _
Xenobiotic degradation _
Host bacterium [NCBI Taxonomy ID] Rhizobium gallicum bv. gallicum R602 [1418105]
Reference
 N/A

Microbial Bioinformatics Group in MML, SJTU