 oriTDB accession number | 100616 |
| Name | oriT_pKP13b  |
Sequence Completeness  | intact |
| oriT length | 193 nt |
| oriT sequence | GCGGCAGTGGTTTTAGCGGGTTTCGGGGCGCAGCCCTGAACCAGTCACGTAGCGCTAGCG GAGTGTATACTGGCTAAACATGTTATGACGGAGTGGCAATTTATGAAAGTGCTTCATGTG ACAGGGGAAAAATGCGGCTGCCGGGCGTAAGTGCAAAATGCAGGTGGTGATGAAATGACG CCTCCTCGCTCAC |
| IR (inverted repeat) | [22-29] [33-40] nt (TTCGGGGC..GCCCTGAA) |
| Location of nic site | [73-74] nt |
| Conserved sequence flanking the nic site | CTGG|CTAA |
| Note | predicted by the oriTfinder |
Visualization of oriT structure Reference| ID | 688 |
| Name | Putative relaxase of pKP13b |
| GenBank accession number | WP_045265544 |
| Family | MOBP |
| Length | 497 aa |
| UniProt ID | _ |
| PDB ID | _ |
| Pfam | Relaxase [PF03432.13], Evalue: 2.80E-17, Aligned region: 42..273 |
| Note | putative relaxase |
| Protein sequence [Download] | MIVKFHPRGRGGGGGPVDYLLGKDRQRDGASVLQGKPDEVRELIDASPYAKKYTSGVLSF AEQDLPPGQREKLMASFERVLMPGLDKDQYSVLWVEHRDKGRLELNFLIPNTELLTGKRL QPYYDRADRPRIDAWQTIVNGRLGLHDPNAPENRRVLVSPSALPEAKQEAAQAITSGLLA LASSGELKTRQDVTEALESAGFEVVRTTKSSISIADPDGGRNIRLKGAIYEQSFNAGEGL RAEIESAAADYRRDAESRIQRAREVCQSGTERKREENQRRHPRPRPEAVLSHEPAHERDA AHGQPDVADHRSGLRAADSVERGHSVVAGAADTRELYDHPGAEEHAGHAVREEQRRTALD LRRAETPLREGEPGSGTVRRGLELDDTGGEIAHDGAGKTVAERIRAATAGLLEKAGRVGE RLRGMADDVWSYSTGERGAERARHGLEQAGAEFERAAAPVVERLNAIETHRQQERAVQHQ KALELERSQWQHHGPSL |
Reference| ID | 1076 |
| Plasmid name | pKP13b |
| GenBank accession number | NZ_CP003994.1 |
| Genome size | 3223 bp |
| Coordinate of oriT [Strand] | 2399..2591 [+] |
| Drug resistance | _ |
| Heavy-metal resistance | _ |
| Virulence factor | _ |
| Xenobiotic degradation | _ |
| Host bacterium [NCBI Taxonomy ID] | Klebsiella pneumoniae subsp. pneumoniae Kp13 [1123862] |
Reference| [1] Ramos PI et al (2014) Comparative analysis of the complete genome of KPC-2-producing Klebsiella pneumoniae Kp13 reveals remarkable genome plasticity and a wide repertoire of virulence and resistance mechanisms. BMC Genomics. 15:54. [PMID:24450656] |