oriTDB

The information of the oriT region

oriTDB accession number	100613
Name	oriT_p92-9000
Sequence Completeness	intact
oriT length	86 nt
oriT sequence	CGGGGTGTCGGGGCTAAGCCCTGACCAGGTGGTAATCGTATAGCCGTGCGTGCGCGGTTA TACGATTACACATCCTGTCCCGTTTT
IR (inverted repeat)	IR1: [7-15] [17-25] nt (GTCGGGGCT..AGCCCTGAC) IR2: [32-49] [52-69] nt (GTAATCGTATAGCCGTGC..GCGCGGTTATACGATTAC)
Location of nic site	[77-78] nt
Conserved sequence flanking the nic site	CATCCTG\|T
Note	predicted by the oriTfinder
	L:7-15;R:17-25;L:32-49;R:52-69;D:77-78

Visualization of oriT structure

1...5....10....15....20....25....30....35....40....45....50....55....60

1

CGGGGTGTCGGGGCTAAGCCCTGACCAGGTGGTAATCGTATAGCCGTGCGTGCGCGGTTA

61

TACGATTACACATCCTGTCCCGTTTT

Reference
N/A

I. Information of Relaxase

ID	685
Name	Putative relaxase of p92-9000
GenBank accession number	YP_009328414
Family	MOB_P
Length	906 aa
UniProt ID	A0A142CND5
PDB ID	_
Pfam	Relaxase [PF03432.13], Evalue: 7.30E-51, Aligned region: 61..315
Note	putative relaxase
Protein sequence [Download]	MNAIIPKKRRDGKSSFEDLIAYTSVRDDVPEDELRPDTEVKGEVPHRNRFRRLVDYATRL RNEKFVSLIDVMKDGSQWVNFYGVTCFHNCLSLESAAEEMQKAADLAHFSKDDTDPVFHY ILSWPAHESPRSEQLFDCVRHTLKSLELSKHQYVAAVHTDTDNLHVHVAVNRVHPETGYI NCLPWSQEKLSRACRELELKHGFAPDNGCFVHAPGNRIVRKTALVRERRNAWRRGKKQTF REYIAQMSIAGLREEPAQDWLSLHKRLASDGLYITMQEGELVVKDGWDRAREGIALSSFG PSWTAEKLGRKLGEYQPVPTDIFSQVEAPGRYDPEAINVDIRPEKVAETESLKQYASRHF AERLPAMARNGELKSCLAVHRTLAEAGLWMGIQHGHLVLHDGFDKQQTPVRADSVWPLMT LDYMQDLDGGWQPVPKDIFTQVVPGERFRGHSIGSQPVSDYEWYRMRMGTGPQGAIKREL FSDKESLWGYGLIQCRSLIEEMIADGDFSWQACHEMFARKGLMLQKQHHGLVIVDAFNHE LTPVKASSIHPDLTLSRAEPQAGPFEIAAADIFERVKPECRYNPELAASDEVEPGFRRDP EIRRERREARAAAREDLRARYLAWKEHWRKPDLRYGERLREIHAACRRRKAYIRVQFRDP QLRKLHYHIAEVQRMQALIRLKESVKEERLSLIAEGKWYPLSYRQWVEQQAAQGDRAAVS QLRGWDYRDRRSRNKDKRRTTNVDRCVVLCEPGGTPLFNNVAKLEARLQKNGSVHFRDTR TGKNVCTDYGDRVVFYHHTDRNELAEKLNLIAPVLFSRNGKLGFEPEGSYQQFNDVFAEM VAWHNAAGITGNGHFTITRPDVDLHRQRSEQYYREYIRQQTRLSESHDDNYTLRQEKTWE PPSPGM

Reference
N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
N/A

N/A

Information of plasmid

ID	1073
Plasmid name	p92-9000
GenBank accession number	NC_032099.1
Incompatibility group	IncB/O/K/Z
Genome size	121262 bp
Coordinate of oriT [Strand]	24104..24189 [-]
Drug resistance	tetracycline resistance
Heavy-metal resistance	mercury resistance
Virulence factor	_
Xenobiotic degradation	_
Host bacterium [NCBI Taxonomy ID]	Shigella dysenteriae 92-9000 [984897]

Reference
N/A