oriTDB
The information of the oriT region
oriTDB accession number 100613
Name oriT_p92-9000  insolico
Sequence Completeness intact
oriT length 86 nt
oriT sequence CGGGGTGTCGGGGCTAAGCCCTGACCAGGTGGTAATCGTATAGCCGTGCGTGCGCGGTTA TACGATTACACATCCTGTCCCGTTTT
IR (inverted repeat)IR1: [7-15] [17-25] nt  (GTCGGGGCT..AGCCCTGAC)
IR2: [32-49] [52-69] nt  (GTAATCGTATAGCCGTGC..GCGCGGTTATACGATTAC)
Location of nic site [77-78] nt
Conserved sequence flanking the
  nic site 		CATCCTG|T
Note predicted by the oriTfinder
L:7-15;R:17-25;L:32-49;R:52-69;D:77-78
Visualization of oriT structure
Reference
 N/A
I. Information of Relaxase
ID 685
Name Putative relaxase of p92-9000 insolico
GenBank accession number YP_009328414
Family MOBP
Length 906 aa
UniProt ID A0A142CND5
PDB ID _
Pfam Relaxase [PF03432.13], Evalue: 7.30E-51, Aligned region: 61..315
Note putative relaxase
Protein sequence [Download] MNAIIPKKRRDGKSSFEDLIAYTSVRDDVPEDELRPDTEVKGEVPHRNRFRRLVDYATRL
RNEKFVSLIDVMKDGSQWVNFYGVTCFHNCLSLESAAEEMQKAADLAHFSKDDTDPVFHY
ILSWPAHESPRSEQLFDCVRHTLKSLELSKHQYVAAVHTDTDNLHVHVAVNRVHPETGYI
NCLPWSQEKLSRACRELELKHGFAPDNGCFVHAPGNRIVRKTALVRERRNAWRRGKKQTF
REYIAQMSIAGLREEPAQDWLSLHKRLASDGLYITMQEGELVVKDGWDRAREGIALSSFG
PSWTAEKLGRKLGEYQPVPTDIFSQVEAPGRYDPEAINVDIRPEKVAETESLKQYASRHF
AERLPAMARNGELKSCLAVHRTLAEAGLWMGIQHGHLVLHDGFDKQQTPVRADSVWPLMT
LDYMQDLDGGWQPVPKDIFTQVVPGERFRGHSIGSQPVSDYEWYRMRMGTGPQGAIKREL
FSDKESLWGYGLIQCRSLIEEMIADGDFSWQACHEMFARKGLMLQKQHHGLVIVDAFNHE
LTPVKASSIHPDLTLSRAEPQAGPFEIAAADIFERVKPECRYNPELAASDEVEPGFRRDP
EIRRERREARAAAREDLRARYLAWKEHWRKPDLRYGERLREIHAACRRRKAYIRVQFRDP
QLRKLHYHIAEVQRMQALIRLKESVKEERLSLIAEGKWYPLSYRQWVEQQAAQGDRAAVS
QLRGWDYRDRRSRNKDKRRTTNVDRCVVLCEPGGTPLFNNVAKLEARLQKNGSVHFRDTR
TGKNVCTDYGDRVVFYHHTDRNELAEKLNLIAPVLFSRNGKLGFEPEGSYQQFNDVFAEM
VAWHNAAGITGNGHFTITRPDVDLHRQRSEQYYREYIRQQTRLSESHDDNYTLRQEKTWE
PPSPGM
Reference
 N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
 N/A
 N/A
Information of plasmid
ID 1073
Plasmid name p92-9000
GenBank accession number NC_032099.1
Incompatibility group IncB/O/K/Z
Genome size 121262 bp
Coordinate of oriT  [Strand] 24104..24189 [-]
Drug resistance insolico tetracycline resistance
Heavy-metal resistance insolico mercury resistance
Virulence factor _
Xenobiotic degradation _
Host bacterium [NCBI Taxonomy ID] Shigella dysenteriae 92-9000 [984897]
Reference
 N/A

Microbial Bioinformatics Group in MML, SJTU