oriTDB
The information of the oriT region
oriTDB accession number 100612
Name oriT_pFI430  insolico
Sequence Completeness core
oriT length 40 nt
oriT sequence TCCGTAAGATGCTATCATCTTACTATGCTTGCAAAAGGTC
IR (inverted repeat)[4-11] [16-23] nt  (GTAAGATG..CATCTTAC)
Location of nic site [31-32] nt
Conserved sequence flanking the
  nic site 		CTTG|CA
Note predicted by the oriTfinder
L:4-11;R:16-23;D:31-32
Visualization of oriT structure
Reference
 N/A
I. Information of Relaxase
ID 684
Name MobA_pFI430 insolico
GenBank accession number YP_009091785
Family MOBP
Length 584 aa
UniProt ID W5IDF4
PDB ID _
Pfam Relaxase [PF03432.13], Evalue: 8.30E-34, Aligned region: 34..160
Relaxase [PF03432.13], Evalue: 2.30E-39, Aligned region: 178..328
Note putative relaxase
Protein sequence [Download] MVYTKHIIVHKLKHLRQAKDYVENAEKTLVNESNEDHLTNLFPYISNPDKTMSKQLVSGH
GITNVYDAANEFIATKKLKALSKGTDFNFDPQTGKVRFNVESLEKNNAVLGHHLIQSFSP
DDNLTPEQIHEIGRQTILEFTGGEYEFVIATHVDREHIHNVRPDRVLSQVVCEQGGTSLL
HHIIFNSTNLYTGKQFDWKVIPKEKTKSGKAYDVTKNNFEKVSDKIASRYGAKIIEKSPG
NSHLKYTKWQTQSIYKSQIKQRLDYLLEMSSDIEDFKRKATALNLSFDFSGKWTTYRLLD
EPQMKNTRGRNLDKNRPEKYNLESIIERLETNELSLTVDEVVERYEEKVDVVKQDFDYQV
TVEKGQIDHMTSKGFYLNVDFGIADRGQIFIGGYKVDQLENRDCVLYLKKNETFRLLSEK
EASFTKYLTGHDLAKQLGLYNGTVPLKKEPVISTINQLVDAINFLAEHGVTEGTQFNNME
SQLMSALGEAEEKLYVIDNKIMELTKIAKLLIEKESDHSQAVINELENLGVGPSIKYQDI
HQELQSEKMSRKILKNKFEQTVDEINTFNEIRVTTLEENKGKIL
Reference
 N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
 N/A
 N/A
Information of plasmid
ID 1072
Plasmid name pFI430
GenBank accession number NC_025249.1
Genome size 59474 bp
Coordinate of oriT  [Strand] 30906..30945 [+]
Drug resistance _
Heavy-metal resistance _
Virulence factor _
Xenobiotic degradation _
Host bacterium [NCBI Taxonomy ID] Lactococcus lactis subsp. cremoris MG1363 [416870]
Reference
 N/A

Microbial Bioinformatics Group in MML, SJTU