oriTDB
The information of the oriT region
oriTDB accession number 100586
Name oriT_pSTd4  insolico
Sequence Completeness intact
oriT length 83 nt
oriT sequence GGGTGTCGGGGCGCAGCCATGACCCAGTCACGTAGCGATAGCGGAGTGTATACTGGCTTA ACTATGCGGCATCGATGCGGATT
IR (inverted repeat)[3-12] [16-25] nt  (GTGTCGGGGC..GCCATGACCC)
Location of nic site [56-57] nt
Conserved sequence flanking the
  nic site 		CTGG|CTTA
Note predicted by the oriTfinder
L:3-12;R:16-25;D:56-57
Visualization of oriT structure
Reference
 N/A
I. Information of Relaxase
ID 658
Name Mob_pSTd4 insolico
GenBank accession number YP_009062992
Family MOBP
Length 517 aa
UniProt ID I6NJ97
PDB ID _
Pfam Relaxase [PF03432.13], Evalue: 1.50E-18, Aligned region: 49..246
Note putative relaxase
Protein sequence [Download] MIVKFHARGKGGGSGPVDYLLGRERNREGATVLQGNPEEVRELIDATPFAKKYTSGVLSF
AEKELPPGGREKVMASFERVLMPGLEKNQYSILWVEHQDKGRLELNFVIPNMELQSGKRL
QPYYDRADRPRIDAWQTLVNHHYGLHDPNAPENRRILTLPDNLPETKQALAESVTRGIDA
LYHVGEIKGRQDVIQALTEAGIEVVRVTRSSISIADPNGGRNIRLKGAFYEQSFTDGRGV
REKAERESRIYRENAEQRVQEARRICKRGCDIKRDENQRRYSPVHSLDREIAGKTPGRGE
RGDDAAQEGCVKAGREYGHDVTGDSLSPVYREWRDALVSWREDTGEPGRNQEAGRDIAET
EREDMGRGVCAGREQEIPCPSVREISGGDSLSGERVGTSEGVTQSDRAGNTFAERLRAAA
TGLYAAAERMGERLRGIAEDVFAYATGQRDAERAGHAVESAGAALERADRTLEPVIQREL
EIREERLIQEREHVLSLERERQPEIQERTLDGPSLGW
Reference
 N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
 N/A
 N/A
Information of plasmid
ID 1046
Plasmid name pSTd4
GenBank accession number NC_025026.1
Incompatibility group ColRNAI
Genome size 5569 bp
Coordinate of oriT  [Strand] 5324..5406 [-]
Drug resistance _
Heavy-metal resistance _
Virulence factor _
Xenobiotic degradation _
Host bacterium [NCBI Taxonomy ID] Salmonella enterica subsp. enterica serovar Typhi [90370]
Reference
 N/A

Microbial Bioinformatics Group in MML, SJTU