oriTDB
The information of the oriT region
oriTDB accession number 100581
Name oriT_pNDM-Iz4b  insolico
Sequence Completeness incomplete
oriT length 38 nt
oriT sequence AGGGATTCATAAGGGAATTATTCCCTTATGTGGGGCTT
IR (inverted repeat)[8-17] [21-30] nt  (CATAAGGGAA..TTCCCTTATG)
Location of nic site _
Conserved sequence flanking the
  nic site 		_
Note predicted by the oriTfinder
L:8-17;R:21-30
Visualization of oriT structure
Reference
 N/A
I. Information of Relaxase
ID 653
Name TraA_pNDM-Iz4b insolico
GenBank accession number YP_009062724
Family MOBQ
Length 996 aa
UniProt ID H6VYP3
PDB ID _
Pfam AAA_30 [PF13604.5], Evalue: 3.70E-45, Aligned region: 371..567
MobA_MobL [PF03389.14], Evalue: 1.50E-26, Aligned region: 47..237
AAA_19 [PF13245.5], Evalue: 1.70E-10, Aligned region: 376..503
Viral_helicase1 [PF01443.17], Evalue: 1.60E-05, Aligned region: 617..736
Note putative relaxase
Protein sequence [Download] MTIAVGMHASAFLSEKQKKQKQKRHKMAIYHLSVKTGRQYGSTGTRGANHYAYINRDGKY
KRDDLENIKSGNLPSWATDAKHFWKSADKNERINGRVYTELEISLPRELNKEQREELVEK
FVEKTLGENFTYSYAIHSPLASDGQQNPHVHLMFSERKLDGIERDEVKHFKRYNPVNPEK
GGAGKDRYFSSKMFVVDTRLEWANHVNDFCENLGIDARIDHRSFKEQGIELSSQNFRADY
VSSHKYHINENIKQVRHQNGEIIIERPSEAIKALTSNQSVFSVRELERFLMAHTDGEEQY
LKAYESVITCPDMATLYGKDKVVFSSKELVGIEESISTFIYNANEESRIQKPFNLVEKLP
LNAVRVAETRTFNSEQEKAFYTLTSTDRITLLNGSAGTGKSYVLSAVSEAYKESDYQVYG
IALQAITAKAIANDCDIPSSTIASFLSKYDSGNLEINNKTVLILDEAGMVGSRDMQRLLM
LVEKHDAQIKLVGDSYQLSAVSAGHVFANIQENLDKKNIASLEDIQRQKHAKESDKMIQA
SKYLSKHEVGKAIDIYKSINMVNEYESHDLALAKTVKSWSEDSSESKLMLAHSNSDVNEL
NRMARALLIKQGKLNPESVSVKNYQGDLDISIGEKIVFKQNNSQMKVSNGELAKVIGFEK
DKFNNPKAMMVQMESDSRIVRVDLKEYDQFKHGYANTIHSSQGMTVDSAYIVASENMNAN
LTYVALTRHKQNIQINYSALTFATNEKETVKTPDGKVSYDHNYKPVEREVTAFENFKKVL
GRSETKEFSTDFTLVESKDNLMKSYLNDHRLHLENKRELFGINSKLYSLTSENKTFTKEE
IVSEVRASLKSKALLGDEIVKFNGNMNIAKGELVKLTNDLEIKTGLFKKVTFEKGTELKV
IDAYKVKDKPVMKARIKNEEYEIPFNKLNLEYSDKYFNEFKDQSKARFDSRHKTEVYTEF
REQLLKQKANAPKDNLNAPNQRIKNPNTPNRNTPKY
Reference
 N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
 N/A
 N/A
Information of plasmid
ID 1041
Plasmid name pNDM-Iz4b
GenBank accession number NC_025000.1
Genome size 46570 bp
Coordinate of oriT  [Strand] 259..296 [+]
Drug resistance insolico bleomycin resistance
Heavy-metal resistance _
Virulence factor _
Xenobiotic degradation _
Host bacterium [NCBI Taxonomy ID] Acinetobacter lwoffii Iz4b [28090]
Reference
 N/A

Microbial Bioinformatics Group in MML, SJTU