oriTDB
The information of the oriT region
oriTDB accession number 100538
Name oriT_pSEEH1578_03  insolico
Sequence Completeness intact
oriT length 186 nt
oriT sequence GGTTTTAGCAGGTTTCGGGGCGCAGCCCTGAACCAGTCACGTAGCGCTAGCGGAGTGTAT ACTGGCTCAATATGTTACGGCGGAGTAACACGTAATGAAAGTGCTTCATGTGGCAGGAGA AAAATGCAGCTGCAGGGCGTACAGGAGAAAATGGAGGTTACGGTGATATGACGCCTCCTC GCTCAC
IR (inverted repeat)[14-21] [25-32] nt  (TTCGGGGC..GCCCTGAA)
Location of nic site [65-66] nt
Conserved sequence flanking the
  nic site 		CTGG|CTCA
Note predicted by the oriTfinder
L:14-21;R:25-32;D:65-66
Visualization of oriT structure
Reference
 N/A
I. Information of Relaxase
ID 609
Name Nuclease_pSEEH1578_03 insolico
GenBank accession number WP_000635829
Family MOBP
Length 499 aa
UniProt ID _
PDB ID _
Pfam Relaxase [PF03432.13], Evalue: 1.10E-16, Aligned region: 41..275
Note putative relaxase
Protein sequence [Download] MIVKFHPRGRGGGAGPVDYLLGKDRQRDGATVLQGKPEEVRELIDASPYAKKYTSGVLSF
AEKDLPPGQREKLMASFERVLMPGLDKDQYSVLWVEHQDKGRLELNFLIPNMELLTGRRL
QPYYDRADRPRIDAWQTIVNGRLGLHDPNAPENRRALVTPSALPKTKQEAAQAITRGLLA
LASSGGLKTRQDVTEALESAGFEVVRTTKSSISIADPDGGRNIRLKGAIYEQSFNAGEGL
RAEIESAAAEYRRDAESRIQRAREVCQSGTERKREENQRRHPRPRPEAVLSHEPAHERHG
AYGQPDVADHRPGVYTADSIGRKHSMVAGTADTRQLHDHPGAEEHAGHAVREEQRRADLD
LRRAETPLREGEPGSGTVRRGFELDDTGGEIAHDGAGKTVAERIRAATAGLLEKAGRVGE
RLRGMADDVWSYATGERGAERARHGLEQAGAEFERAAAPVVTRLNVIEAHREQERAAQHQ
KALELERSQRQRTYNGPSL
Reference
 N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
 N/A
 N/A
Information of plasmid
ID 999
Plasmid name pSEEH1578_03
GenBank accession number NC_021869.1
Genome size 4773 bp
Coordinate of oriT  [Strand] 2905..3090 [+]
Drug resistance _
Heavy-metal resistance _
Virulence factor _
Xenobiotic degradation _
Host bacterium [NCBI Taxonomy ID] Salmonella enterica subsp. enterica serovar Heidelberg str. 41578 [1124936]
Reference
 N/A

Microbial Bioinformatics Group in MML, SJTU